Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 2630.5 1330 100.0
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1945.2 1338 72.7
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1933.7 1331 73.0
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1905.6 1335 72.1
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1899.4 1339 72.1
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1857.0 1331 70.3
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1853.2 1335 70.5
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1843.6 1330 70.9
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1841.6 1335 70.1
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1841.2 1342 69.9
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1830.5 1332 70.6
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1825.8 1334 69.0
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1818.5 1336 69.6
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1811.6 1332 68.0
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1810.0 1332 68.6
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1809.3 1331 68.8
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1805.4 1335 68.6
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 1802.7 1331 68.1
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1798.1 1334 69.3
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1795.4 1343 67.0
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1794.6 1335 68.2
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 1794.2 1335 68.2
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1791.2 1335 68.0
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1788.9 1335 67.9
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1788.1 1332 68.3
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1787.7 1335 68.0
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1787.7 1331 67.9
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1786.9 1279 69.7
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1783.1 1334 68.1
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1781.5 1334 68.1
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1777.3 1256 72.5
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1775.4 1335 67.4
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1766.5 1328 67.6
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1763.0 1333 68.0
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1759.2 1328 67.2
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1753.8 1328 67.2
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1751.9 1329 66.8
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1750.7 1330 65.5
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1748.0 1328 67.5
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1745.7 1353 66.0
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1743.8 1328 68.1
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1741.1 1335 65.4
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1729.5 1328 65.4
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1727.6 1330 66.2
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 1725.7 1332 65.8
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1709.5 1330 64.7
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1706.0 1332 64.9
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1704.1 1253 68.3
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1701.4 1330 64.5
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1694.5 1328 64.5
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1693.3 1332 64.3
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1692.6 1331 64.2
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1689.1 1331 64.9
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1686.0 1250 68.9
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1682.2 1247 68.3
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1672.1 1333 64.1
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1671.0 1336 63.7
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1664.8 1329 63.4
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1661.4 1333 64.3
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1651.3 1273 65.0
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1650.6 1331 62.2
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1649.4 1334 63.9
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1649.0 1332 63.9
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1647.1 1276 65.8
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1637.5 1332 62.8
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1634.8 1282 67.6
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1629.8 1332 62.5
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1599.7 1335 61.8
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1598.6 1103 73.4
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1597.4 1332 62.5
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1583.5 1337 60.7
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1582.4 1337 60.7
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1582.0 1335 61.3
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1581.2 1335 61.2
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1580.1 1337 61.0
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1579.7 1331 61.3
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1578.5 1339 60.9
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1573.1 1335 61.0
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1573.1 1335 61.3
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1569.3 1192 65.4
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1558.5 1333 60.9
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1554.3 1326 61.1
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1551.2 1363 59.4
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1550.4 1341 58.2
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1549.3 1108 70.1
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1500.3 1325 57.4
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1489.2 1334 58.5
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1467.2 1133 65.4
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1457.2 1565 51.8
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1447.2 1325 57.7
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1427.2 1118 62.9
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1410.2 1353 55.0
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1398.3 1157 61.8
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1394.4 1331 57.2
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1373.6 1099 62.2
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1306.6 1339 54.4
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1277.7 952 67.6
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1229.5 850 72.9
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1224.9 907 66.5
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1191.8 1257 51.0
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1138.3 758 75.3
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 6.3e-263 911.8 1372 39.1
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 1.1e-238 831.2 858 50.5
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 5.0e-236 822.4 1162 40.5
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 1.4e-233 814.3 1309 38.3
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 7.0e-230 802.0 1159 41.5
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 2.1e-226 790.4 813 54.2
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 3.3e-163 580.5 1502 30.7
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 8.8e-140 502.7 359 70.5
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 1.8e-137 495.0 461 57.3
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 1.0e-127 462.6 376 62.0
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 6.6e-95 353.6 313 62.6
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 3.4e-91 341.3 258 65.1
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 6.4e-90 337.0 1368 26.2
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 3.6e-85 321.2 1627 25.1
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 1.2e-72 279.6 312 49.0
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.6e-69 269.2 197 73.6
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 1.3e-63 249.6 1272 23.8
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 6.1e-56 224.2 168 72.6
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 1.5e-51 209.5 211 52.1
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 1.4e-49 203.0 233 47.6
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 2.5e-49 202.2 1350 25.2
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 2.2e-42 179.1 135 70.4
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 6.7e-39 167.5 131 68.7
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 1.2e-32 146.7 140 59.3
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 3.6e-32 145.2 290 39.3


User provided reference genes

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