Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.5e-183 646.0 317 100.0
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 3.0e-139 498.8 319 76.2
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 4.0e-139 498.4 321 76.0
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.9e-135 484.6 316 75.0
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.0e-134 483.8 317 73.2
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.3e-134 483.4 329 72.3
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 3.8e-134 481.9 329 72.0
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 2.2e-129 466.1 311 71.7
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 5.4e-128 461.5 295 75.6
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 5.9e-127 458.0 287 76.0
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 5.9e-127 458.0 287 74.9
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 1.0e-126 457.2 309 71.8
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.7e-126 456.4 287 74.6
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 5.0e-126 454.9 286 76.2
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.5e-125 452.6 291 72.9
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.6e-124 449.9 295 72.5
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.6e-124 449.9 295 72.2
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 2.1e-124 449.5 291 72.5
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.8e-124 449.1 291 73.2
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.8e-124 449.1 283 74.6
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 3.6e-124 448.7 285 74.4
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 3.6e-124 448.7 324 67.9
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.4e-123 446.8 295 71.9
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.8e-123 446.4 289 73.4
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.8e-123 446.4 305 69.8
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 7.5e-122 441.0 294 70.4
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 7.5e-122 441.0 349 64.2
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.3e-121 440.3 294 70.4
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.3e-121 440.3 296 72.3
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 2.2e-121 439.5 315 67.9
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 4.9e-121 438.3 290 72.1
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 4.9e-121 438.3 308 67.9
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.2e-120 435.6 293 69.6
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 7.0e-120 434.5 332 66.9
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.6e-119 433.3 312 69.2
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 2.7e-119 432.6 313 67.4
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 3.5e-119 432.2 325 66.5
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 4.6e-119 431.8 285 71.9
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 7.8e-119 431.0 288 71.2
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 3.9e-118 428.7 296 71.3
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 5.0e-118 428.3 303 68.3
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 9.5e-117 424.1 312 64.7
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 8.1e-116 421.0 260 75.8
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.8e-115 419.9 294 67.3
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.5e-114 416.8 285 69.5
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.7e-113 413.3 327 65.4
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.9e-113 412.5 281 69.8
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.1e-112 410.6 284 67.6
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.4e-112 410.2 303 66.3
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 3.2e-112 409.1 308 64.0
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 5.4e-112 408.3 248 77.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 9.2e-112 407.5 254 74.8
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 3.5e-111 405.6 256 76.2
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 7.8e-111 404.4 295 65.4
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.0e-110 404.1 284 67.6
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.7e-110 403.3 255 74.1
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.1e-109 400.6 304 65.8
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 3.3e-109 399.1 300 65.7
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 3.3e-109 399.1 248 75.0
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 5.6e-109 398.3 291 62.9
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 9.5e-109 397.5 291 65.6
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.2e-108 397.1 321 61.1
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.2e-108 397.1 262 71.8
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 4.0e-107 392.1 292 62.3
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 5.8e-106 388.3 292 62.0
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 7.6e-106 387.9 292 62.0
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 7.6e-106 387.9 281 65.8
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.7e-105 386.7 304 60.2
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 2.2e-105 386.3 288 62.2
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 4.9e-105 385.2 292 61.6
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 4.9e-105 385.2 291 61.2
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 8.4e-105 384.4 291 61.2
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 8.4e-105 384.4 292 62.0
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 3.2e-104 382.5 223 79.4
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 4.1e-104 382.1 291 60.8
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.6e-103 380.2 286 62.9
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.6e-103 380.2 293 61.1
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 2.7e-103 379.4 292 61.0
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 7.8e-103 377.9 303 62.4
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 1.0e-102 377.5 291 60.8
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.1e-99 367.5 251 67.7
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 3.1e-99 365.9 254 69.3
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 3.1e-99 365.9 285 62.1
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 9.9e-98 360.9 286 61.5
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.1e-94 348.6 294 59.2
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.1e-94 348.6 294 59.2
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.5e-93 347.1 272 60.3
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 4.8e-92 342.0 268 60.1
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.2e-90 337.4 291 55.7
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.7e-89 333.6 286 59.4
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 7.9e-87 324.7 218 70.6
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.8e-86 323.6 291 57.4
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 4.3e-85 318.9 239 65.3
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 3.6e-84 315.8 296 54.7
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.4e-83 313.9 190 76.3
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 3.4e-82 309.3 564 35.8
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 6.4e-81 305.1 279 50.5
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 8.4e-81 304.7 283 56.5
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.1e-80 304.3 196 71.4
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.8e-78 297.0 278 48.6
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 2.3e-78 296.6 191 71.2
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 4.3e-77 292.4 167 82.0
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.8e-76 289.7 304 51.3
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 4.0e-75 285.8 278 50.0
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 8.4e-73 278.1 303 44.9
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.8e-70 270.4 245 60.0
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.7e-69 265.4 245 58.4
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 6.5e-65 251.9 153 73.2
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 2.5e-64 250.0 154 74.0
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.3e-59 232.3 180 63.3
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 1.2e-58 231.1 267 48.3
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 5.9e-58 228.8 166 68.1
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 6.1e-55 218.8 148 67.6
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 5.9e-50 202.2 140 70.7
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 3.0e-46 189.9 135 65.2
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 7.4e-45 185.3 232 47.4
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.3e-44 184.5 195 51.3
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 9.1e-43 178.3 216 37.0
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 5.9e-42 175.6 117 66.7
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 7.2e-40 168.7 148 57.4
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.4e-38 164.5 278 36.7
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 5.3e-35 152.5 127 58.3
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 5.3e-35 152.5 128 58.6
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 2.2e-33 147.1 137 60.6
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 3.6e-31 139.8 79 79.7
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.4e-27 127.9 102 61.8
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 2.0e-26 124.0 100 61.0
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 7.5e-21 105.5 162 42.6
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 4.9e-20 102.8 67 73.1
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.2e-18 98.2 76 57.9
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.6e-15 87.8 110 52.7
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.6e-15 86.7 85 52.9
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 3.7e-12 76.6 81 56.8


User provided reference genes

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