Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 0.0e+00 1216.1 625 100.0
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 0.0e+00 1127.5 608 95.6
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 5.5e-310 1067.0 628 87.3
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 3.3e-307 1057.7 626 86.3
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 8.2e-306 1053.1 625 85.6
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.1e-305 1052.7 632 83.2
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.1e-305 1050.8 625 83.7
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.6e-304 1048.9 625 85.0
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 3.5e-304 1047.7 625 84.2
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 7.7e-304 1046.6 626 84.0
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 7.7e-304 1046.6 629 83.8
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.3e-303 1045.8 631 84.2
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 1.7e-303 1045.4 630 84.0
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.9e-303 1044.6 630 83.8
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.1e-302 1042.7 625 84.2
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.5e-302 1042.3 558 91.4
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 1.5e-302 1042.3 626 84.2
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 2.5e-302 1041.6 630 83.5
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 1.8e-300 1035.4 636 82.9
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 2.0e-299 1031.9 625 82.2
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 4.4e-299 1030.8 573 87.8
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 5.7e-299 1030.4 627 82.5
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 5.7e-299 1030.4 557 90.3
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 1.4e-297 1025.8 625 82.6
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.4e-297 1025.0 634 82.5
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 9.1e-297 1023.1 625 81.8
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 1.2e-296 1022.7 569 87.9
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 2.0e-296 1021.9 591 86.8
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 2.0e-296 1021.9 625 82.9
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 3.5e-296 1021.1 635 81.7
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 3.8e-295 1017.7 626 81.8
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 5.0e-295 1017.3 632 81.2
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 6.5e-295 1016.9 629 82.8
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 1.5e-294 1015.8 628 81.4
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 1.9e-294 1015.4 564 88.3
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.5e-294 1015.0 694 76.8
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 2.5e-294 1015.0 629 81.2
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 7.2e-294 1013.4 639 80.1
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 7.2e-294 1013.4 638 79.8
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 4.7e-293 1010.7 575 86.1
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 4.7e-293 1010.7 638 79.5
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 6.1e-293 1010.4 567 88.0
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 1.8e-292 1008.8 566 86.4
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 2.3e-292 1008.4 569 87.0
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 4.0e-292 1007.7 630 80.2
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 6.8e-292 1006.9 559 88.7
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 8.8e-292 1006.5 569 86.1
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.5e-291 1005.7 563 87.4
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 4.4e-291 1004.2 566 87.8
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 4.4e-291 1004.2 595 82.7
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 5.7e-291 1003.8 632 80.7
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 1.3e-290 1002.7 606 82.8
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 1.7e-290 1002.3 568 87.3
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 2.2e-290 1001.9 569 85.9
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 2.2e-290 1001.9 640 82.2
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 3.7e-290 1001.1 569 85.8
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 3.7e-290 1001.1 557 87.4
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 4.9e-290 1000.7 569 85.8
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 6.3e-290 1000.3 559 87.5
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 8.3e-290 1000.0 666 77.2
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.3e-290 1000.0 569 85.6
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 1.1e-289 999.6 597 83.1
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.1e-289 999.6 572 85.3
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 1.1e-289 999.6 572 85.3
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 1.1e-289 999.6 558 86.4
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.8e-289 998.8 569 85.9
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 4.1e-289 997.7 601 82.0
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 7.0e-289 996.9 592 84.0
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 1.6e-288 995.7 559 87.5
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 2.0e-288 995.3 629 79.5
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.7e-288 995.0 568 84.5
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 7.8e-288 993.4 567 85.2
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 7.8e-288 993.4 568 85.2
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.0e-287 993.0 558 86.4
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.0e-287 993.0 558 86.2
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.7e-287 992.3 558 86.2
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 2.9e-287 991.5 564 86.0
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 2.5e-286 988.4 616 80.0
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 4.3e-286 987.6 609 80.5
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 7.3e-286 986.9 558 86.7
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.6e-285 985.7 566 85.7
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 4.7e-285 984.2 569 85.1
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 4.7e-285 984.2 558 85.5
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 6.1e-285 983.8 566 85.3
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 1.0e-284 983.0 617 79.6
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.4e-284 982.6 558 85.3
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 1.8e-284 982.2 563 85.3
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.8e-284 982.2 638 79.5
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 5.2e-284 980.7 566 85.0
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.2e-284 980.7 574 83.6
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 6.8e-284 980.3 558 85.1
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.5e-283 979.2 566 85.2
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 2.0e-283 978.8 567 84.8
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 2.0e-283 978.8 567 84.8
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 2.6e-283 978.4 567 85.0
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 5.7e-283 977.2 527 90.5
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 9.8e-283 976.5 567 84.7
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 9.8e-283 976.5 567 84.7
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 9.8e-283 976.5 569 84.4
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 1.3e-282 976.1 568 84.3
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 1.7e-282 975.7 566 84.3
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.7e-282 975.7 636 78.1
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 2.9e-282 974.9 567 84.5
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 2.9e-282 974.9 567 84.5
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 2.4e-281 971.8 562 84.7
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.2e-280 969.5 568 84.0
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 5.9e-280 967.2 568 83.8
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 6.6e-279 963.8 581 82.3
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 8.6e-279 963.4 580 82.6
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.1e-277 958.7 555 83.2
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 4.1e-273 944.5 629 78.1
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.7e-271 939.1 558 79.9
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.0e-271 937.6 558 82.4
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 4.0e-268 927.9 557 79.4
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.6e-264 914.4 512 87.1
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 1.3e-263 912.9 645 74.9
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 3.0e-263 911.8 539 84.0
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.9e-262 909.1 568 75.9
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.2e-259 899.8 527 83.9
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 7.6e-259 897.1 635 75.3
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 3.5e-256 888.3 559 76.6
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.4e-244 849.0 568 76.1
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.5e-243 846.3 640 68.0
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 5.6e-238 827.8 559 71.0
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 1.2e-235 820.1 557 70.9
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 1.1e-230 803.5 490 82.7
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.6e-227 792.3 490 79.0
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 8.7e-223 777.3 433 89.1
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 3.1e-220 768.8 494 77.9
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 3.4e-219 765.4 468 79.3
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 2.2e-218 762.7 552 66.7
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 5.5e-217 758.1 426 87.1
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.3e-215 753.4 490 79.0
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 7.4e-214 747.7 433 83.6
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.6e-208 729.9 422 84.8
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 4.5e-203 711.8 561 61.9
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.7e-197 693.3 403 85.9
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 3.0e-175 619.4 433 74.4
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.0e-167 592.8 573 53.1
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 8.9e-159 564.7 312 88.8
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 4.6e-147 525.8 384 72.4
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 4.6e-131 472.6 340 74.7
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 7.9e-123 445.3 301 75.7
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 1.6e-104 384.4 277 68.6
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 3.8e-93 346.7 216 78.2
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 5.9e-78 296.2 217 74.7
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 2.5e-76 290.8 150 93.3
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 3.3e-73 280.4 557 33.0
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 4.5e-70 270.0 150 87.3
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 3.5e-62 243.8 131 89.3
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 1.6e-59 235.0 133 82.7
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 1.1e-55 222.2 126 83.3
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 7.8e-54 216.1 184 65.2
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 1.5e-52 211.8 115 87.8
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 9.5e-52 209.1 114 86.8
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 1.0e-50 205.7 116 88.8
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 3.4e-49 200.7 109 89.9
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 8.6e-45 186.0 137 66.4
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.1e-44 185.7 105 80.0
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 3.3e-44 184.1 115 76.5
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 2.1e-43 181.4 139 68.3
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 6.2e-43 179.9 252 47.6
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 1.2e-38 165.6 166 56.6
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 6.8e-34 149.8 87 82.8
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 1.8e-26 125.2 70 81.4
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 1.8e-26 125.2 116 60.3
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.2e-26 123.6 61 96.7
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.9e-23 115.2 212 35.8
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.5e-20 104.8 56 91.1
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 1.8e-18 98.6 67 70.1
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 4.4e-17 94.0 85 61.2
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 7.6e-17 93.2 184 31.5
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 7.3e-12 76.6 54 72.2


User provided reference genes

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