Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 5.4e-51 204.1 110 100.0
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 3.3e-48 194.9 114 93.9
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 9.5e-48 193.4 114 93.0
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 1.2e-47 193.0 114 93.0
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.6e-47 192.6 114 93.0
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 1.6e-47 192.6 114 92.1
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 2.8e-47 191.8 111 93.7
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 2.8e-47 191.8 111 93.7
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 3.6e-47 191.4 111 92.8
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.7e-47 191.0 114 91.2
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.7e-47 191.0 114 91.2
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 6.1e-47 190.7 114 92.1
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 8.0e-47 190.3 114 91.2
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 8.0e-47 190.3 114 90.4
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.0e-46 189.9 105 97.1
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 1.0e-46 189.9 114 91.2
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 1.0e-46 189.9 114 91.2
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.4e-46 189.5 114 90.4
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 1.4e-46 189.5 114 91.2
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.4e-46 189.5 114 91.2
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 1.8e-46 189.1 114 90.4
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.8e-46 189.1 114 90.4
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.8e-46 189.1 114 90.4
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.8e-46 189.1 114 90.4
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 1.8e-46 189.1 114 90.4
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 2.3e-46 188.7 105 97.1
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.3e-46 188.7 114 89.5
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 2.3e-46 188.7 114 90.4
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 3.0e-46 188.3 110 91.8
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 3.0e-46 188.3 113 90.3
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 3.0e-46 188.3 114 90.4
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 4.0e-46 188.0 114 89.5
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 5.2e-46 187.6 114 90.4
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 5.2e-46 187.6 112 91.1
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 5.2e-46 187.6 113 90.3
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 5.2e-46 187.6 114 90.4
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 5.2e-46 187.6 114 90.4
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 5.2e-46 187.6 111 91.9
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 6.8e-46 187.2 114 90.4
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 6.8e-46 187.2 114 89.5
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 8.9e-46 186.8 114 89.5
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 1.2e-45 186.4 114 87.7
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 1.2e-45 186.4 113 89.4
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 1.2e-45 186.4 114 89.5
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.5e-45 186.0 113 89.4
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 1.5e-45 186.0 114 88.6
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 1.5e-45 186.0 114 88.6
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 1.5e-45 186.0 114 88.6
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 2.0e-45 185.7 111 90.1
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 2.6e-45 185.3 111 89.2
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 2.6e-45 185.3 114 88.6
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 2.6e-45 185.3 111 87.4
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 2.6e-45 185.3 113 88.5
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.6e-45 185.3 103 96.1
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 2.6e-45 185.3 110 90.0
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.6e-45 185.3 112 89.3
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.6e-45 185.3 112 89.3
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 2.6e-45 185.3 114 89.5
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.6e-45 185.3 110 90.9
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 3.4e-45 184.9 110 89.1
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 3.4e-45 184.9 114 88.6
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 3.4e-45 184.9 110 89.1
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 4.4e-45 184.5 111 89.2
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 4.4e-45 184.5 111 87.4
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 4.4e-45 184.5 111 87.4
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 5.8e-45 184.1 114 87.7
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 5.8e-45 184.1 114 87.7
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 5.8e-45 184.1 114 86.8
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 5.8e-45 184.1 114 87.7
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 5.8e-45 184.1 114 87.7
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 7.5e-45 183.7 114 86.0
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 7.5e-45 183.7 111 87.4
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 7.5e-45 183.7 114 87.7
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 9.8e-45 183.3 111 88.3
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.3e-44 183.0 110 89.1
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-44 183.0 110 88.2
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.3e-44 183.0 110 88.2
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 1.3e-44 183.0 111 88.3
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 1.3e-44 183.0 110 90.0
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 1.3e-44 183.0 114 88.6
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.7e-44 182.6 112 87.5
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.7e-44 182.6 112 87.5
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 1.7e-44 182.6 112 87.5
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 1.7e-44 182.6 110 88.2
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.2e-44 182.2 114 86.0
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.2e-44 182.2 114 86.0
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 2.2e-44 182.2 101 96.0
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 2.2e-44 182.2 114 86.8
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.2e-44 182.2 114 86.8
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.2e-44 182.2 114 86.8
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 2.9e-44 181.8 110 88.2
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 2.9e-44 181.8 110 88.2
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.7e-44 181.4 114 86.0
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 3.7e-44 181.4 110 87.3
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 3.7e-44 181.4 113 85.0
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.9e-44 181.0 114 86.0
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 6.4e-44 180.6 112 87.5
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 8.3e-44 180.3 114 86.0
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 1.1e-43 179.9 114 86.0
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 1.1e-43 179.9 114 86.0
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-43 179.9 114 86.0
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.1e-43 179.9 105 92.4
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.1e-43 179.9 114 85.1
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 1.1e-43 179.9 114 85.1
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 1.4e-43 179.5 112 86.6
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 1.4e-43 179.5 112 86.6
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 1.4e-43 179.5 110 88.2
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 1.4e-43 179.5 102 94.1
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 2.4e-43 178.7 110 87.3
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 3.2e-43 178.3 110 87.3
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 4.1e-43 177.9 112 87.5
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 7.0e-43 177.2 110 86.4
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 1.2e-42 176.4 107 86.9
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.0e-42 175.6 105 91.4
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.5e-42 174.9 122 81.1
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.6e-41 170.6 110 85.5
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 2.5e-40 168.7 110 81.8
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 9.5e-40 166.8 112 80.4
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 2.1e-39 165.6 101 87.1
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.8e-39 165.2 110 80.9
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.8e-38 162.5 114 82.5
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 3.1e-38 161.8 108 79.6
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 7.5e-37 157.1 110 76.4
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 2.2e-36 155.6 103 79.6
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 8.3e-36 153.7 104 81.7
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 9.2e-35 150.2 88 90.9
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 6.0e-34 147.5 112 68.8
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 6.0e-34 147.5 87 90.8
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 2.3e-33 145.6 88 88.6
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 7.8e-26 120.6 109 56.0
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 1.9e-24 115.9 111 52.3
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 1.5e-21 106.3 66 83.3
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 4.4e-21 104.8 64 85.9
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 4.4e-21 104.8 69 79.7
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 4.9e-20 101.3 101 47.5
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 2.1e-15 85.9 50 94.0
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 8.1e-15 84.0 114 51.8
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 5.2e-14 81.3 53 83.0
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 2.9e-12 75.5 40 97.5
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 1.1e-11 73.6 114 47.4
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 2.1e-10 69.3 114 45.6


User provided reference genes

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