Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1985.7 972 100.0
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1318.9 969 68.7
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 0.0e+00 1250.0 972 65.3
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1229.2 967 64.0
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 0.0e+00 1221.8 980 64.0
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 0.0e+00 1205.3 1012 61.3
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 0.0e+00 1201.8 971 64.1
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 0.0e+00 1201.4 1036 60.5
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 0.0e+00 1198.7 977 62.5
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 0.0e+00 1198.7 1091 57.8
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 0.0e+00 1196.0 894 66.2
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 0.0e+00 1194.9 978 62.8
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 0.0e+00 1179.9 969 63.1
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 0.0e+00 1176.0 929 63.2
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 0.0e+00 1167.9 974 61.5
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1166.4 971 62.9
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 0.0e+00 1166.4 1017 59.3
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1162.9 998 60.3
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 0.0e+00 1162.1 974 61.8
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 0.0e+00 1153.3 981 61.1
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 0.0e+00 1149.0 997 60.4
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 0.0e+00 1143.3 747 73.1
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1142.1 967 61.6
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 0.0e+00 1131.7 1050 57.3
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1130.5 997 59.8
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1125.5 967 61.1
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 0.0e+00 1125.5 969 61.1
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1125.2 989 59.0
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 0.0e+00 1113.6 968 60.1
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 0.0e+00 1102.0 987 58.0
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1101.7 975 59.6
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 0.0e+00 1099.7 983 57.7
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 0.0e+00 1098.2 980 58.0
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1095.1 969 59.2
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 0.0e+00 1093.6 970 57.9
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 0.0e+00 1092.4 993 56.5
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 0.0e+00 1088.6 980 58.3
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 0.0e+00 1083.2 968 58.4
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 0.0e+00 1078.9 973 58.3
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 0.0e+00 1077.8 980 56.3
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 3.3e-309 1065.1 987 57.9
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.0e-307 1060.1 967 58.0
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 4.4e-306 1054.7 980 57.4
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 4.1e-304 1048.1 977 56.1
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 4.1e-304 1048.1 1018 54.8
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 9.2e-304 1047.0 968 58.1
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 9.2e-304 1047.0 1016 55.0
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 6.0e-303 1044.3 965 55.8
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.0e-302 1043.5 896 60.8
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 2.3e-302 1042.3 920 58.4
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.2e-300 1036.6 977 56.3
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.2e-298 1030.0 981 55.4
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 2.2e-297 1025.8 970 55.7
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 4.9e-297 1024.6 999 54.7
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 5.4e-296 1021.1 1016 54.0
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 9.2e-296 1020.4 753 65.9
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.0e-294 1015.4 1026 53.6
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.2e-292 1010.0 974 54.9
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 2.8e-292 1008.8 978 55.5
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.1e-291 1005.4 978 55.0
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 2.0e-290 1002.7 936 57.5
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 6.4e-289 997.7 920 56.5
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.9e-288 996.1 974 55.2
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 7.8e-287 990.7 932 57.0
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 7.6e-282 974.2 980 52.4
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.9e-280 969.5 979 53.1
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.6e-279 966.5 968 53.7
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.1e-279 966.1 967 53.8
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 1.7e-278 963.0 894 56.2
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 5.1e-278 961.4 995 53.7
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 4.3e-277 958.4 689 68.1
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 8.1e-276 954.1 967 51.4
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 5.3e-275 951.4 827 61.3
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 2.0e-274 949.5 978 52.4
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 4.9e-273 944.9 967 53.3
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 6.4e-273 944.5 979 52.5
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 8.4e-273 944.1 966 53.0
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 8.4e-273 944.1 997 51.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 3.2e-272 942.2 981 52.1
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 7.1e-272 941.0 997 51.6
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 2.1e-271 939.5 981 52.4
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 3.9e-270 935.3 1003 51.7
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.4e-267 926.8 1021 50.2
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 6.0e-263 911.4 976 50.6
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.8e-254 883.2 437 99.1
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 8.4e-249 864.4 572 73.1
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 1.5e-242 843.6 700 60.3
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 8.2e-236 821.2 530 74.2
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 2.9e-233 812.8 748 58.0
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.5e-232 809.7 984 47.1
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 6.5e-225 785.0 800 52.2
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.5e-224 783.1 749 56.9
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 2.6e-218 763.1 557 65.9
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 2.5e-216 756.5 459 77.6
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 2.0e-210 736.9 823 49.8
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 3.1e-203 713.0 482 73.4
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 1.6e-194 684.1 1046 40.0
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 4.6e-194 682.6 1155 36.9
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 5.6e-192 675.6 911 41.8
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-188 664.1 973 40.6
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.5e-173 614.4 609 51.9
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 5.6e-168 595.9 1038 37.7
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.2e-167 592.4 720 44.6
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.9e-166 588.6 761 42.8
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 6.6e-153 545.8 480 59.8
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.6e-153 545.8 747 41.9
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.5e-152 544.7 441 63.0
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.5e-152 544.7 441 63.0
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-144 517.7 968 35.5
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 7.9e-138 495.7 313 73.5
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-137 495.4 672 42.3
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-137 494.2 481 50.5
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 2.5e-136 490.7 278 83.1
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-126 458.8 663 40.7
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 7.9e-122 442.6 643 42.3
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 5.1e-121 439.9 359 60.4
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.2e-108 397.9 315 63.5
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.3e-104 384.0 751 34.0
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 5.9e-101 373.2 467 45.0
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-98 364.4 781 33.5
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-94 351.3 630 36.5
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 5.0e-92 343.6 409 46.7
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 9.2e-86 322.8 409 47.9
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 7.7e-85 319.7 417 42.4
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 4.3e-75 287.3 163 79.8
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.5e-72 278.9 649 31.3
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.9e-67 261.9 139 84.2
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 3.1e-65 254.6 270 49.3
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.0e-60 238.0 378 38.9
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-53 215.7 191 53.4
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 1.9e-51 208.8 752 26.1
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.9e-51 208.8 542 31.2
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.4e-49 202.6 164 64.0
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 3.1e-49 201.4 138 71.7
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 1.3e-47 196.1 205 51.7
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.3e-46 189.9 159 54.1
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.1e-43 183.0 152 61.8
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 4.8e-42 177.6 111 76.6
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 3.4e-40 171.4 106 79.2
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 3.4e-40 171.4 343 32.7
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 9.3e-38 163.3 272 34.6
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 4.6e-37 161.0 275 40.7
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.8e-32 144.1 670 23.6
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.3e-31 142.9 179 46.9
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.1e-30 139.8 89 71.9
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 3.9e-28 131.3 122 56.6
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.1e-27 129.8 84 73.8
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.3e-26 126.3 86 68.6
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.0e-25 121.3 83 75.9
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 4.2e-22 111.3 109 53.2
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 1.6e-21 109.4 70 72.9
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 1.9e-11 75.9 64 54.7
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 5.7e-11 74.3 111 44.1
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 7.4e-11 73.9 75 50.7
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.5e-07 60.5 71 45.1
Dinv31046 Davidia involucrata HOM05D050287 ORTHO05D005784 4.2e-06 58.2 70 47.1
Dinv31054 Davidia involucrata HOM05D050287 ORTHO05D005784 4.2e-06 58.2 70 47.1


User provided reference genes

Program Settings