Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1719.9 932 100.0
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1349.7 934 77.4
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1338.6 895 79.9
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1333.5 935 77.6
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1310.8 943 75.3
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1307.0 939 76.6
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1306.2 934 76.8
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1302.7 934 75.6
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1298.5 935 73.3
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1298.5 936 76.3
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1294.6 936 75.7
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1291.2 934 75.6
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1287.7 935 75.4
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1282.3 940 75.3
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1282.3 947 71.7
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1281.5 942 73.5
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1281.5 931 73.0
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1280.4 934 75.3
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1280.4 950 71.7
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1276.2 934 73.1
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1276.2 952 72.6
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1276.2 935 72.1
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1274.6 938 74.8
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1272.3 935 74.8
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1266.5 938 73.6
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1265.0 938 74.0
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1265.0 938 74.1
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1262.3 939 71.9
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1260.0 988 68.6
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1256.1 988 68.2
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1250.3 968 71.9
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1242.3 939 70.5
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1235.7 962 69.2
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1234.9 963 68.8
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1234.9 936 71.0
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1234.6 933 72.2
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1228.0 939 72.5
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1227.6 938 72.3
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1226.8 934 70.0
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1225.7 938 72.7
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1225.3 934 69.4
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1224.5 935 72.5
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1224.5 935 72.5
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1221.8 934 70.3
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1221.1 934 69.3
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1221.1 944 71.9
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1219.5 933 72.1
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1219.5 938 72.3
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1218.8 964 71.1
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1217.2 934 71.6
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1216.8 940 71.7
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1214.5 935 69.6
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1213.7 934 71.8
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1207.2 934 72.1
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1202.6 934 71.6
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1201.0 936 70.8
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1200.3 937 70.7
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1199.5 939 70.3
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1197.6 935 70.5
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1197.6 931 73.0
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1192.9 941 71.2
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1189.9 934 70.6
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1186.8 937 70.4
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1183.3 958 68.9
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1182.9 934 70.8
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1182.2 937 70.4
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1172.9 937 69.6
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1169.5 940 68.8
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1166.4 942 68.9
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1162.1 958 67.8
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1161.7 956 67.7
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1159.4 963 67.7
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1159.1 956 67.6
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1159.1 959 67.7
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1158.7 959 68.0
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1158.7 958 67.8
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1156.7 958 68.0
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1149.4 934 66.1
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1141.3 951 70.0
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1138.3 995 63.7
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1131.3 869 71.8
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1127.5 941 67.4
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 1109.4 943 67.2
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1105.1 952 63.8
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1103.6 957 65.6
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1086.6 1007 62.2
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1085.9 937 63.7
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1080.1 933 63.8
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 4.5e-311 1071.2 733 74.8
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 1.4e-285 986.5 795 67.2
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.2e-280 968.0 742 70.8
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 6.0e-268 927.9 952 56.1
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 1.9e-266 922.9 784 66.5
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 9.5e-266 920.6 981 56.6
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 6.2e-265 917.9 967 53.9
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 3.2e-253 879.0 589 77.8
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 3.5e-252 875.5 590 81.0
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 4.7e-249 865.1 927 55.7
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 4.9e-230 802.0 520 79.6
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.4e-229 800.4 520 79.8
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 5.7e-218 761.9 520 76.7
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 1.8e-211 740.3 621 64.3
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 8.8e-211 738.0 871 49.1
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.4e-176 624.4 768 48.3
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 3.7e-161 573.2 531 60.3
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.9e-149 534.3 391 71.6
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 7.3e-149 532.3 463 65.4
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.1e-135 487.6 323 80.2
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 9.6e-133 478.8 329 75.1
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 2.1e-116 424.5 399 58.9
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 1.1e-115 422.2 777 35.6
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 2.1e-108 397.9 392 58.2
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.6e-103 380.2 391 56.3
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 6.7e-102 376.3 385 57.4
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 4.1e-99 367.1 358 55.9
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.2e-90 339.0 788 33.0
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 1.4e-86 325.5 214 78.5
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 7.7e-82 309.7 343 52.8
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 2.0e-77 295.0 253 56.9
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 5.7e-77 293.5 330 52.4
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 2.9e-73 281.2 372 48.1
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 1.1e-67 262.7 313 49.8
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.0e-66 258.5 175 74.3
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 4.5e-66 257.3 147 87.1
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 3.8e-65 254.2 149 87.9
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.6e-63 248.8 198 66.2
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 1.7e-57 228.8 374 42.0
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 1.6e-55 222.2 374 40.6
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 4.0e-54 217.6 371 40.4
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 3.4e-53 214.5 374 39.8
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 7.8e-50 203.4 106 95.3
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 6.6e-49 200.3 113 89.4
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-47 196.1 111 89.2
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 3.6e-47 194.5 113 87.6
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 6.8e-46 190.3 113 85.8
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 6.8e-46 190.3 113 85.8
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-42 179.5 109 85.3
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 2.3e-41 175.3 600 29.2
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 6.6e-41 173.7 106 84.0
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 2.8e-39 168.3 97 85.6
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 6.8e-38 163.7 99 82.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.2e-37 162.9 89 89.9
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 1.7e-36 159.1 271 42.1
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 1.2e-34 152.9 82 93.9
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 7.8e-26 123.6 150 51.3
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 3.1e-22 111.7 75 78.7
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 8.9e-22 110.2 75 77.3
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 5.4e-19 100.9 91 61.5
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 6.2e-15 87.4 173 37.6


User provided reference genes

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