Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.5e-98 362.1 176 100.0
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 8.8e-72 273.9 176 75.0
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 2.3e-67 259.2 175 71.4
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 6.1e-65 251.1 176 67.0
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 3.0e-64 248.8 176 67.6
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 8.8e-64 247.3 186 64.5
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.2e-63 246.9 168 72.0
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 2.0e-63 246.1 175 68.0
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 4.4e-63 245.0 176 69.3
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 5.7e-63 244.6 186 64.0
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 7.5e-63 244.2 176 67.0
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 9.8e-63 243.8 196 64.8
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 9.8e-63 243.8 182 64.8
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 2.8e-62 242.3 175 68.0
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 2.8e-62 242.3 176 67.6
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 1.4e-61 240.0 176 67.0
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.4e-61 239.2 175 65.7
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 3.1e-61 238.8 196 63.8
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.2e-60 236.9 177 65.5
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 4.5e-60 235.0 177 66.1
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 5.9e-60 234.6 171 64.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 7.8e-60 234.2 177 65.5
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.0e-59 233.8 157 73.2
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 2.3e-59 232.6 176 64.2
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 2.9e-59 232.3 178 66.3
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 2.9e-59 232.3 176 63.6
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.9e-59 232.3 176 63.6
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 6.6e-59 231.1 179 64.2
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 8.6e-59 230.7 176 63.6
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.5e-58 229.9 176 64.2
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 3.3e-58 228.8 196 61.2
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.3e-58 228.8 175 64.6
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 4.3e-58 228.4 175 61.1
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 9.5e-58 227.3 176 63.1
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.2e-57 226.9 175 64.0
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.2e-57 226.9 175 61.1
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 1.6e-57 226.5 177 63.8
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.1e-57 226.1 181 62.4
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.0e-56 223.8 176 60.8
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.0e-56 222.2 171 63.2
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 4.0e-56 221.9 177 61.0
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.0e-56 221.9 123 84.6
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 6.8e-56 221.1 176 63.6
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.5e-55 219.9 175 60.6
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 4.4e-55 218.4 176 60.8
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 7.5e-55 217.6 180 61.1
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.3e-54 216.9 202 52.5
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 2.2e-54 216.1 202 52.5
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 3.7e-54 215.3 172 61.6
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.2e-52 210.3 180 58.3
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 1.6e-52 209.9 185 57.8
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.0e-51 207.2 175 60.6
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.3e-51 206.8 175 61.7
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.3e-51 206.1 175 57.7
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 8.6e-51 204.1 165 58.8
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 2.5e-50 202.6 175 56.6
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.3e-50 202.2 120 74.2
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 3.3e-50 202.2 177 59.3
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 5.6e-50 201.4 169 57.4
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 5.6e-50 201.4 169 56.8
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 9.5e-50 200.7 173 57.2
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 9.5e-50 200.7 173 57.2
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.8e-49 199.1 175 58.9
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 3.6e-49 198.7 169 56.8
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.1e-48 197.2 124 71.0
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.4e-48 196.8 171 58.5
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-48 196.8 175 55.4
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 2.3e-48 196.1 169 56.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 2.3e-48 196.1 171 58.5
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.1e-48 195.7 175 56.6
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 4.0e-48 195.3 169 55.6
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 4.0e-48 195.3 176 56.2
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 6.8e-48 194.5 175 56.6
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 8.9e-48 194.1 146 63.7
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 8.9e-48 194.1 114 72.8
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.2e-47 193.7 149 62.4
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.2e-47 193.7 155 60.6
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 1.5e-47 193.4 124 68.5
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 2.0e-47 193.0 138 63.8
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 2.6e-47 192.6 125 68.8
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 3.4e-47 192.2 160 58.1
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 4.4e-47 191.8 174 57.5
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 5.8e-47 191.4 171 55.6
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 7.5e-47 191.0 161 59.0
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 7.5e-47 191.0 161 59.0
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 7.5e-47 191.0 130 65.4
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 9.8e-47 190.7 156 59.6
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.7e-46 189.9 167 58.7
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.9e-46 189.1 177 55.9
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.9e-46 189.1 177 55.9
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 3.7e-46 188.7 161 58.4
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 3.7e-46 188.7 161 58.4
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 3.7e-46 188.7 161 58.4
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 3.7e-46 188.7 161 58.4
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 4.9e-46 188.3 149 61.1
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 6.4e-46 188.0 112 73.2
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 6.4e-46 188.0 130 65.4
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.1e-45 187.2 176 54.5
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.4e-45 186.8 176 54.5
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 5.4e-45 184.9 161 57.1
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 7.0e-45 184.5 162 57.4
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.0e-45 184.5 175 53.1
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 9.2e-45 184.1 160 57.5
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.2e-44 183.7 172 54.1
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 1.6e-44 183.3 114 70.2
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 2.7e-44 182.6 161 56.5
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 2.7e-44 182.6 161 56.5
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 2.7e-44 182.6 161 56.5
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 2.7e-44 182.6 165 53.3
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 3.5e-44 182.2 161 55.9
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.6e-44 181.8 175 53.1
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 3.0e-43 179.1 131 60.3
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 3.9e-43 178.7 161 57.1
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 6.6e-43 177.9 161 54.7
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 6.6e-43 177.9 167 53.9
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 6.6e-43 177.9 119 65.5
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 1.1e-42 177.2 171 49.7
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.5e-42 176.0 119 63.9
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 3.3e-42 175.6 167 53.3
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 7.3e-42 174.5 121 63.6
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 9.5e-42 174.1 160 55.0
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 1.2e-41 173.7 164 55.5
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 1.2e-41 173.7 199 47.7
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 4.7e-41 171.8 175 49.7
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 6.2e-41 171.4 185 50.8
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 114 66.7
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-40 170.2 114 65.8
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.3e-40 169.5 141 56.0
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.2e-39 167.2 114 62.3
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.0e-39 166.4 120 59.2
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.6e-39 166.0 119 58.8
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 2.9e-38 162.5 120 57.5
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.2e-37 159.1 120 59.2
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 5.4e-37 158.3 119 63.0
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 5.4e-37 158.3 157 52.2
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.3e-35 152.9 125 56.8
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.1e-35 151.8 109 60.6
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.5e-34 150.2 173 45.7
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.9e-34 149.8 175 44.6
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 5.6e-34 148.3 147 50.3
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 2.1e-33 146.4 188 44.7
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 6.2e-33 144.8 122 54.9
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.1e-32 144.1 116 56.9
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.1e-32 144.1 112 56.2
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.8e-32 141.4 102 58.8
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.3e-30 137.1 110 61.8
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 6.4e-30 134.8 109 61.5
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 8.4e-30 134.4 97 59.8
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 1.6e-28 130.2 106 53.8
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.1e-27 125.2 96 59.4
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 1.1e-26 124.0 107 53.3
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.1e-26 124.0 93 60.2
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 2.5e-26 122.9 117 52.1
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 7.3e-26 121.3 118 48.3
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 1.1e-24 117.5 181 38.1
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.8e-24 116.7 84 59.5
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 3.1e-24 115.9 174 36.8
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 5.2e-24 115.2 181 37.6
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.4e-23 112.5 120 46.7
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 4.4e-23 112.1 107 51.4
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.1e-21 107.5 121 49.6
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 1.4e-21 107.1 147 38.1
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.4e-21 105.1 129 45.0
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 7.8e-20 101.3 76 60.5
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 3.6e-17 92.4 125 44.0
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.4e-16 90.5 68 55.9
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 1.4e-16 90.5 133 37.6
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 5.3e-16 88.6 72 56.9
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.3e-14 84.0 101 45.5
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 9.6e-10 67.8 72 45.8
TAR636G2514 Trochodendron aralioides HOM05D007386 ORTHO05D009210 9.6e-10 67.8 52 71.2
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.1e-09 66.6 42 64.3
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.8e-08 63.5 135 36.3


User provided reference genes

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