Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR260G0006 Trochodendron aralioides HOM05D002863 ORTHO05D005691 4.6e-115 417.9 212 100.0
TAR636G1187 Trochodendron aralioides HOM05D002863 ORTHO05D005691 6.0e-83 311.2 185 82.7
Dinv17741 Davidia involucrata HOM05D002863 ORTHO05D005691 4.8e-72 275.0 185 73.5
Nn1g02374 Nelumbo nucifera HOM05D002863 ORTHO05D005691 1.4e-71 273.5 185 72.4
PSO210G3945 Papaver somniferum HOM05D002863 ORTHO05D005691 1.3e-69 266.9 185 68.6
PSO832G1692 Papaver somniferum HOM05D002863 ORTHO05D005691 2.2e-69 266.2 185 68.1
GSVIVG01018011001 Vitis vinifera HOM05D002863 ORTHO05D005691 3.8e-69 265.4 185 68.1
Aqoxy5G00438 Aquilegia oxysepala HOM05D002863 ORTHO05D005691 4.9e-69 265.0 185 69.7
Thecc.05G291200 Theobroma cacao HOM05D002863 ORTHO05D005691 4.2e-68 261.9 185 68.1
MBI05_g12094_MAGBIO Magnolia biondii HOM05D002863 ORTHO05D005691 2.7e-67 259.2 185 67.0
Potri.005G047500 Populus trichocarpa HOM05D002863 ORTHO05D005691 2.7e-67 259.2 184 67.4
COL.COLO4_13640 Corchorus olitorius HOM05D002863 ORTHO05D005691 6.0e-67 258.1 185 67.6
Duzib177G0218 Durio zibethinus HOM05D002863 ORTHO05D005691 6.7e-66 254.6 186 66.1
Gohir.A11G256800 Gossypium hirsutum HOM05D002863 ORTHO05D005691 1.1e-65 253.8 186 66.7
Gohir.D11G266600 Gossypium hirsutum HOM05D002863 ORTHO05D005691 5.7e-65 251.5 186 65.6
TWI12G1273 Tripterygium wilfordii HOM05D002863 ORTHO05D005691 2.1e-64 249.6 185 64.9
Gorai.007G286400 Gossypium raimondii HOM05D002863 ORTHO05D005691 2.8e-64 249.2 187 65.2
Dinv14015 Davidia involucrata HOM05D002863 ORTHO05D005691 3.7e-64 248.8 190 66.8
CSS0000686 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 2.4e-63 246.1 184 66.3
CSS0007282 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 5.3e-63 245.0 184 65.8
CSS0037612 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 5.3e-63 245.0 184 65.8
Thecc.04G235200 Theobroma cacao HOM05D002863 ORTHO05D005691 3.8e-61 238.8 185 62.7
Duzib151G1175 Durio zibethinus HOM05D002863 ORTHO05D005691 1.1e-60 237.3 185 62.2
Os03g0160400 Oryza sativa ssp. japonica HOM05D002863 ORTHO05D005691 2.5e-60 236.1 186 59.1
TWI53G0907 Tripterygium wilfordii HOM05D002863 ORTHO05D005691 9.3e-60 234.2 187 62.0
Cpa.g.sc117.40 Carica papaya HOM05D002863 ORTHO05D005691 3.5e-59 232.3 185 63.2
Eucgr.H03436 Eucalyptus grandis HOM05D002863 ORTHO05D005691 4.6e-59 231.9 184 59.2
CSS0031002 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 6.1e-59 231.5 190 61.1
PGSC0003DMG400016310 Solanum tuberosum HOM05D002863 ORTHO05D005691 3.0e-58 229.2 190 58.9
CSS0024605 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 5.1e-58 228.4 190 62.1
CSS0027055 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 5.1e-58 228.4 190 62.1
Cc03_g04040 Coffea canephora HOM05D002863 ORTHO05D005691 5.1e-58 228.4 189 57.7
Solyc06g054020.3 Solanum lycopersicum HOM05D002863 ORTHO05D005691 1.1e-57 227.3 190 57.9
Sopen06g019190 Solanum pennellii HOM05D002863 ORTHO05D005691 1.1e-57 227.3 190 57.9
PGR004G0456 Punica granatum HOM05D002863 ORTHO05D005691 1.5e-57 226.9 187 60.4
THA.LOC104800956 Tarenaya hassleriana HOM05D002863 ORTHO05D005691 1.5e-57 226.9 187 59.9
Gohir.A09G217400 Gossypium hirsutum HOM05D002863 ORTHO05D005691 1.9e-57 226.5 185 57.8
Potri.008G155400 Populus trichocarpa HOM05D002863 ORTHO05D005691 1.9e-57 226.5 179 62.0
Prupe.1G017300 Prunus persica HOM05D002863 ORTHO05D005691 1.9e-57 226.5 186 60.8
Zm00001eb403310 Zea mays HOM05D002863 ORTHO05D005691 2.5e-57 226.1 188 58.5
Sc13g0004580 Simmondsia chinensis HOM05D002863 ORTHO05D005691 3.3e-57 225.7 171 61.4
Ciclev10000353m.g Citrus clementina HOM05D002863 ORTHO05D005691 4.3e-57 225.3 191 57.1
MD13G1196500 Malus domestica HOM05D002863 ORTHO05D005691 5.7e-57 224.9 185 59.5
Sed0023639 Sechium edule HOM05D002863 ORTHO05D005691 5.7e-57 224.9 184 57.1
HPP92_006123 Vanilla planifolia HOM05D002863 ORTHO05D005691 1.3e-56 223.8 214 53.7
Peaxi162Scf00131g00027 Petunia axillaris HOM05D002863 ORTHO05D005691 1.6e-56 223.4 189 58.2
ClCG06G006340 Citrullus lanatus HOM05D002863 ORTHO05D005691 2.2e-56 223.0 185 57.8
Manes.03G175900 Manihot esculenta HOM05D002863 ORTHO05D005691 2.8e-56 222.6 184 62.0
Sp1g04340 Schrenkiella parvula HOM05D002863 ORTHO05D005691 2.8e-56 222.6 187 58.3
COL.COLO4_21516 Corchorus olitorius HOM05D002863 ORTHO05D005691 3.7e-56 222.2 179 62.6
Gorai.006G240800 Gossypium raimondii HOM05D002863 ORTHO05D005691 3.7e-56 222.2 185 57.8
Gohir.D09G219800 Gossypium hirsutum HOM05D002863 ORTHO05D005691 8.2e-56 221.1 185 57.3
Ciclev10004283m.g Citrus clementina HOM05D002863 ORTHO05D005691 1.1e-55 220.7 178 60.7
Zm00001eb004540 Zea mays HOM05D002863 ORTHO05D005691 1.1e-55 220.7 188 59.0
AL1G15300 Arabidopsis lyrata HOM05D002863 ORTHO05D005691 1.8e-55 219.9 188 59.0
Atru.chr4.2430 Acer truncatum HOM05D002863 ORTHO05D005691 2.4e-55 219.5 185 60.5
Cfa008472 Carpinus fangiana HOM05D002863 ORTHO05D005691 2.4e-55 219.5 186 58.1
Glyma.01G235200 Glycine max HOM05D002863 ORTHO05D005691 2.4e-55 219.5 184 57.1
AUR62005129 Chenopodium quinoa HOM05D002863 ORTHO05D005691 4.1e-55 218.8 171 57.3
Nitab4.5_0000321g0190 Nicotiana tabacum HOM05D002863 ORTHO05D005691 6.9e-55 218.0 190 56.3
Phvul.002G042600 Phaseolus vulgaris HOM05D002863 ORTHO05D005691 6.9e-55 218.0 184 57.1
EL10Ac4g09337 Beta vulgaris HOM05D002863 ORTHO05D005691 9.0e-55 217.6 172 59.3
AUR62000846 Chenopodium quinoa HOM05D002863 ORTHO05D005691 9.0e-55 217.6 171 58.5
Haze_11201 Corylus avellana HOM05D002863 ORTHO05D005691 9.0e-55 217.6 186 57.5
Thhalv10006684m.g Eutrema salsugineum HOM05D002863 ORTHO05D005691 1.2e-54 217.2 187 57.2
CAN.G231.13 Capsicum annuum HOM05D002863 ORTHO05D005691 1.5e-54 216.9 190 55.3
Cc02_g31310 Coffea canephora HOM05D002863 ORTHO05D005691 1.5e-54 216.9 185 57.3
arahy.Tifrunner.gnm1.ann1.IF8NHZ Arachis hypogaea HOM05D002863 ORTHO05D005691 2.0e-54 216.5 186 57.5
arahy.Tifrunner.gnm1.ann1.SX262Z Arachis hypogaea HOM05D002863 ORTHO05D005691 2.0e-54 216.5 186 57.5
CARHR004950 Cardamine hirsuta HOM05D002863 ORTHO05D005691 2.0e-54 216.5 188 57.4
Nitab4.5_0006783g0030 Nicotiana tabacum HOM05D002863 ORTHO05D005691 2.0e-54 216.5 190 54.7
CsaV3_7G022380 Cucumis sativus L. HOM05D002863 ORTHO05D005691 3.4e-54 215.7 185 55.1
MELO3C012664.2 Cucumis melo HOM05D002863 ORTHO05D005691 5.9e-54 214.9 185 54.6
AT1G05460 Arabidopsis thaliana HOM05D002863 ORTHO05D005691 1.3e-53 213.8 187 56.1
CDE06G1398 Ceratophyllum demersum HOM05D002863 ORTHO05D005691 1.3e-53 213.8 186 55.4
Sopen06g019210 Solanum pennellii HOM05D002863 ORTHO05D005691 1.3e-53 213.8 186 54.8
CANSAT78G2191 Cannabis sativa HOM05D002863 ORTHO05D005691 2.9e-53 212.6 187 52.9
Oeu018974.1 Olea europaea HOM05D002863 ORTHO05D005691 2.9e-53 212.6 191 55.5
Psat2g190040 Pisum sativum HOM05D002863 ORTHO05D005691 5.0e-53 211.8 185 55.1
Aa31LG1G19180 Aethionema arabicum HOM05D002863 ORTHO05D005691 6.5e-53 211.5 189 56.1
Carub.0001s0479 Capsella rubella HOM05D002863 ORTHO05D005691 6.5e-53 211.5 187 55.6
Solyc06g054050.3 Solanum lycopersicum HOM05D002863 ORTHO05D005691 6.5e-53 211.5 185 54.1
QL06p001686 Quercus lobata HOM05D002863 ORTHO05D005691 8.5e-53 211.1 185 56.8
TPR.G38022 Trifolium pratense HOM05D002863 ORTHO05D005691 2.5e-52 209.5 184 55.4
BcaC05g24383 Brassica carinata HOM05D002863 ORTHO05D005691 3.2e-52 209.1 188 55.3
C05p03810 Brassica napus HOM05D002863 ORTHO05D005691 3.2e-52 209.1 188 55.3
BolC5t29158H Brassica oleracea HOM05D002863 ORTHO05D005691 3.2e-52 209.1 188 55.3
LjContig00222g0014636 Lotus japonicus HOM05D002863 ORTHO05D005691 4.2e-52 208.8 185 54.1
CiPaw.01G198300 Carya illinoinensis HOM05D002863 ORTHO05D005691 7.2e-52 208.0 185 54.1
RcHm_v2.0_Chr4g0415581 Rosa chinensis HOM05D002863 ORTHO05D005691 9.4e-52 207.6 186 54.8
Ca_24420_v3 Cicer arietinum L. HOM05D002863 ORTHO05D005691 1.2e-51 207.2 183 55.2
Migut.G00361 Erythranthe guttata HOM05D002863 ORTHO05D005691 1.6e-51 206.8 190 52.6
HanXRQChr02g0033141 Helianthus annuus HOM05D002863 ORTHO05D005691 1.6e-51 206.8 197 53.3
Medtr2g049990 Medicago truncatula HOM05D002863 ORTHO05D005691 1.6e-51 206.8 184 53.3
Hund10646 Selenicereus undatus HOM05D002863 ORTHO05D005691 1.6e-51 206.8 174 55.7
ATR0665G272 Amborella trichopoda HOM05D002863 ORTHO05D005691 2.1e-51 206.5 184 54.9
DCAR_002375 Daucus carota HOM05D002863 ORTHO05D005691 2.1e-51 206.5 188 53.2
Lsat_1_v5_gn_9_80360 Lactuca sativa HOM05D002863 ORTHO05D005691 2.1e-51 206.5 196 53.6
Lalb_Chr16g0376481 Lupinus albus HOM05D002863 ORTHO05D005691 2.1e-51 206.5 187 53.5
Medtr5g006890 Medicago truncatula HOM05D002863 ORTHO05D005691 2.1e-51 206.5 184 53.3
BraA10t42687Z Brassica rapa HOM05D002863 ORTHO05D005691 3.6e-51 205.7 188 55.3
BcaB02g06857 Brassica carinata HOM05D002863 ORTHO05D005691 7.9e-51 204.5 188 53.7
FAN07G0972 Fragaria x ananassa HOM05D002863 ORTHO05D005691 7.9e-51 204.5 186 53.2
A10p04180 Brassica napus HOM05D002863 ORTHO05D005691 1.4e-50 203.8 188 54.8
FAN12G0500 Fragaria x ananassa HOM05D002863 ORTHO05D005691 1.4e-50 203.8 186 53.2
VMungo1215G2311 Vigna mungo HOM05D002863 ORTHO05D005691 1.4e-50 203.8 184 52.2
FvH4_4g15972 Fragaria vesca HOM05D002863 ORTHO05D005691 3.0e-50 202.6 186 53.2
FAN17G1329 Fragaria x ananassa HOM05D002863 ORTHO05D005691 3.0e-50 202.6 186 53.8
Eucgr.H04399 Eucalyptus grandis HOM05D002863 ORTHO05D005691 6.7e-50 201.4 187 55.6
VMungo0251G0587 Vigna mungo HOM05D002863 ORTHO05D005691 6.7e-50 201.4 184 51.6
Nitab4.5_0002361g0230 Nicotiana tabacum HOM05D002863 ORTHO05D005691 1.1e-49 200.7 184 53.3
PGR004G1808 Punica granatum HOM05D002863 ORTHO05D005691 2.0e-49 199.9 223 44.8
SGA_v2.0_scaffold191G40493 Striga asiatica HOM05D002863 ORTHO05D005691 2.0e-49 199.9 191 50.8
ECA236G4457 Erigeron canadensis HOM05D002863 ORTHO05D005691 9.7e-49 197.6 196 48.5
Rhsim04G0200000 Rhododendron simsii HOM05D002863 ORTHO05D005691 2.4e-47 193.0 191 52.9
SalBow2G0283 Salvia bowleyana HOM05D002863 ORTHO05D005691 9.4e-44 181.0 191 46.1
CDE07G0808 Ceratophyllum demersum HOM05D002863 ORTHO05D005691 1.4e-42 177.2 186 50.5
A08p08300 Brassica napus HOM05D002863 ORTHO05D005691 2.2e-37 159.8 149 54.4
Sed0008697 Sechium edule HOM05D002863 ORTHO05D005691 1.3e-32 144.1 185 42.2
PGSC0003DMG400016265 Solanum tuberosum HOM05D002863 ORTHO05D005691 1.7e-32 143.7 186 43.0
unitig_899.g14832 Utricularia gibba HOM05D002863 ORTHO05D005691 1.8e-31 140.2 146 45.9
Lj3E732T0 Lonicera japonica HOM05D002863 ORTHO05D005691 8.0e-27 124.8 81 72.8
Pp3c12_8920 Physcomitrium patens HOM05D002863 ORTHO05D005691 2.6e-25 119.8 159 40.3
SEGI_07136 Sequoiadendron giganteum HOM05D002863 ORTHO05D005691 1.1e-23 114.4 160 40.6
HanXRQChr04g0095851 Helianthus annuus HOM05D002863 ORTHO05D005691 5.2e-18 95.5 89 53.9
SMO223G0021 Selaginella moellendorffii HOM05D002863 ORTHO05D005691 4.5e-14 82.4 174 31.0
Lj3A732T73 Lonicera japonica HOM05D002863 ORTHO05D005691 1.0e-13 81.3 60 63.3
Nitab4.5_0002840g0170 Nicotiana tabacum HOM05D002863 ORTHO05D005691 1.2e-11 74.3 45 75.6
HanXRQChr04g0115181 Helianthus annuus HOM05D002863 ORTHO05D005691 8.0e-11 71.6 70 48.6
HanXRQChr04g0115171 Helianthus annuus HOM05D002863 ORTHO05D005691 7.5e-09 65.1 68 48.5


User provided reference genes

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