Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR120G0001 Trochodendron aralioides HOM05D000042 ORTHO05D000028 1.0e-41 172.9 86 100.0
TAR138G0002 Trochodendron aralioides HOM05D000042 ORTHO05D000028 5.7e-24 114.0 88 71.6
TAR376G1203 Trochodendron aralioides HOM05D000042 ORTHO05D000028 6.3e-23 110.5 88 69.3
TAR376G0847 Trochodendron aralioides HOM05D000042 ORTHO05D000028 1.8e-22 109.0 88 69.3
COL.COLO4_35302 Corchorus olitorius HOM05D000042 ORTHO05D000028 1.2e-18 96.3 82 61.0
Nn1g05657 Nelumbo nucifera HOM05D000042 ORTHO05D000028 5.2e-17 90.9 83 57.8
TAR628G1225 Trochodendron aralioides HOM05D000042 ORTHO05D000028 5.7e-16 87.4 83 56.6
Rhsim06G0069700 Rhododendron simsii HOM05D000042 ORTHO05D000028 4.8e-15 84.3 83 53.0
TAR381G0641 Trochodendron aralioides HOM05D000042 ORTHO05D000028 1.4e-14 82.8 87 51.7
MBI16_g07267_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000028 2.4e-14 82.0 83 51.8
Potri.002G109601 Populus trichocarpa HOM05D000042 ORTHO05D000028 3.1e-14 81.6 83 54.2
Atru.chr13.954 Acer truncatum HOM05D000042 ORTHO05D000028 5.4e-14 80.9 87 50.6
Haze_22494 Corylus avellana HOM05D000042 ORTHO05D000028 1.6e-13 79.3 83 53.0
Potri.005G150501 Populus trichocarpa HOM05D000042 ORTHO05D000028 1.6e-13 79.3 87 51.7
Gorai.010G032600 Gossypium raimondii HOM05D000042 ORTHO05D000028 4.5e-13 77.8 83 51.8
Prupe.1G538800 Prunus persica HOM05D000042 ORTHO05D000028 5.9e-13 77.4 77 53.2
Duzib116G0482 Durio zibethinus HOM05D000042 ORTHO05D000028 1.3e-12 76.3 83 50.6
Sopen04g030410 Solanum pennellii HOM05D000042 ORTHO05D000028 2.9e-12 75.1 82 48.8
Gohir.D06G029700 Gossypium hirsutum HOM05D000042 ORTHO05D000028 3.8e-12 74.7 83 50.6
Gohir.A05G217000 Gossypium hirsutum HOM05D000042 ORTHO05D000028 6.6e-12 73.9 87 49.4
Manes.18G057830 Manihot esculenta HOM05D000042 ORTHO05D000028 2.5e-11 72.0 83 47.0
TWI56G0284 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 3.3e-11 71.6 87 48.3
Medtr5g066990 Medicago truncatula HOM05D000042 ORTHO05D000028 5.5e-11 70.9 87 46.0
Gorai.009G227400 Gossypium raimondii HOM05D000042 ORTHO05D000028 7.2e-11 70.5 87 48.3
Gohir.D05G220400 Gossypium hirsutum HOM05D000042 ORTHO05D000028 9.5e-11 70.1 87 48.3
Nitab4.5_0010043g0020 Nicotiana tabacum HOM05D000042 ORTHO05D000028 9.5e-11 70.1 82 47.6
Haze_03924 Corylus avellana HOM05D000042 ORTHO05D000028 1.2e-10 69.7 87 50.6
CSS0003338 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.6e-10 69.3 80 51.2
Manes.05G187800 Manihot esculenta HOM05D000042 ORTHO05D000028 3.6e-10 68.2 83 47.0
Cc10_g08290 Coffea canephora HOM05D000042 ORTHO05D000028 4.7e-10 67.8 85 42.4
Dinv44881 Davidia involucrata HOM05D000042 ORTHO05D000028 8.0e-10 67.0 87 43.7
Eucgr.F00448 Eucalyptus grandis HOM05D000042 ORTHO05D000028 8.0e-10 67.0 86 47.7
Nitab4.5_0000885g0070 Nicotiana tabacum HOM05D000042 ORTHO05D000028 8.0e-10 67.0 87 43.7
GSVIVG01009219001 Vitis vinifera HOM05D000042 ORTHO05D000028 8.0e-10 67.0 86 48.8
Peaxi162Scf00160g00916 Petunia axillaris HOM05D000042 ORTHO05D000028 1.0e-09 66.6 81 43.2
Oeu035069.1 Olea europaea HOM05D000042 ORTHO05D000028 1.4e-09 66.2 87 47.1
MSTRG.22181 Avicennia marina HOM05D000042 ORTHO05D000028 1.8e-09 65.9 84 40.5
CSS0007500 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.8e-09 65.9 80 48.8
Oeu024986.1 Olea europaea HOM05D000002 ORTHO05D000001 1.8e-09 65.9 86 44.2
PSO700G0165 Papaver somniferum HOM05D000042 ORTHO05D000028 1.8e-09 65.9 78 43.6
MBI16_g12289_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000028 2.3e-09 65.5 82 48.8
Psat2g065080 Pisum sativum HOM05D000042 ORTHO05D000028 2.3e-09 65.5 83 42.2
Atru.chr3.1180 Acer truncatum HOM05D000042 ORTHO05D000028 3.0e-09 65.1 80 43.8
Phvul.008G183700 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 5.2e-09 64.3 83 43.4
MELO3C003502.2 Cucumis melo HOM05D000042 ORTHO05D000028 6.8e-09 63.9 88 44.3
CsaV3_3G048150 Cucumis sativus L. HOM05D000042 ORTHO05D000028 6.8e-09 63.9 77 45.5
Sabra02G0086300 Salix brachista HOM05D000042 ORTHO05D000028 6.8e-09 63.9 71 50.7
Sc16g0000710 Simmondsia chinensis HOM05D000042 ORTHO05D000028 6.8e-09 63.9 74 47.3
vmacro22766 Vaccinium macrocarpon HOM05D000042 ORTHO05D000028 6.8e-09 63.9 87 41.4
GSVIVG01003861001 Vitis vinifera HOM05D000042 ORTHO05D000028 6.8e-09 63.9 81 44.4
GSVIVG01003864001 Vitis vinifera HOM05D000042 ORTHO05D000028 6.8e-09 63.9 81 44.4
Glyma.02G216600 Glycine max HOM05D000042 ORTHO05D000028 1.2e-08 63.2 81 44.4
Actinidia29654 Actinidia chinensis HOM05D000042 ORTHO05D000028 1.5e-08 62.8 86 43.0
Glyma.14G183800 Glycine max HOM05D000042 ORTHO05D000028 3.4e-08 61.6 87 42.5
Gohir.A06G030400 Gossypium hirsutum HOM05D000042 ORTHO05D000028 3.4e-08 61.6 87 43.7
Lalb_Chr11g0064831 Lupinus albus HOM05D000042 ORTHO05D000028 3.4e-08 61.6 89 42.7
Aqoxy6G00651 Aquilegia oxysepala HOM05D000042 ORTHO05D000028 4.4e-08 61.2 86 44.2
CiPaw.08G144400 Carya illinoinensis HOM05D000042 ORTHO05D000028 5.7e-08 60.8 87 42.5
VMungo0647G1511 Vigna mungo HOM05D000042 ORTHO05D000028 5.7e-08 60.8 86 39.5
Prupe.6G208900 Prunus persica HOM05D000042 ORTHO05D000028 7.5e-08 60.5 77 40.3
ClCG11G014760 Citrullus lanatus HOM05D000042 ORTHO05D000028 9.8e-08 60.1 81 43.2
Sc15g0003030 Simmondsia chinensis HOM05D000042 ORTHO05D000028 9.8e-08 60.1 82 43.9
CAN.G1104.15 Capsicum annuum HOM05D000042 ORTHO05D000028 1.3e-07 59.7 87 40.2
Cc07_g07970 Coffea canephora HOM05D000042 ORTHO05D000028 1.3e-07 59.7 82 42.7
Nitab4.5_0003184g0050 Nicotiana tabacum HOM05D000042 ORTHO05D000028 1.3e-07 59.7 86 41.9
Peaxi162Scf00703g00011 Petunia axillaris HOM05D000042 ORTHO05D000028 1.3e-07 59.7 86 41.9
Peaxi162Scf01138g00116 Petunia axillaris HOM05D000042 ORTHO05D000028 1.3e-07 59.7 82 41.5
Migut.N02838 Erythranthe guttata HOM05D000042 ORTHO05D000028 1.7e-07 59.3 83 43.4
FAN08G2306 Fragaria x ananassa HOM05D000042 ORTHO05D000028 1.7e-07 59.3 81 43.2
PGSC0003DMG400009349 Solanum tuberosum HOM05D000042 ORTHO05D000028 1.7e-07 59.3 85 41.2
CSS0046108 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 2.2e-07 58.9 90 43.3
Cpa.g.sc177.12 Carica papaya HOM05D000042 ORTHO05D000028 2.2e-07 58.9 87 40.2
CAN.G723.9 Capsicum annuum HOM05D000185 ORTHO05D000105 2.8e-07 58.5 86 40.7
Cpa.g.sc961.1 Carica papaya HOM05D000042 ORTHO05D000028 2.8e-07 58.5 80 41.2
Haze_10443 Corylus avellana HOM05D000042 ORTHO05D000028 2.8e-07 58.5 89 39.3
vmacro05524 Vaccinium macrocarpon HOM05D000042 ORTHO05D000028 2.8e-07 58.5 81 42.0
arahy.Tifrunner.gnm1.ann1.S6RW25 Arachis hypogaea HOM05D000042 ORTHO05D000028 4.9e-07 57.8 85 40.0
FAN28G0449 Fragaria x ananassa HOM05D000042 ORTHO05D000028 4.9e-07 57.8 81 37.0
Nitab4.5_0000514g0010 Nicotiana tabacum HOM05D000042 ORTHO05D000028 4.9e-07 57.8 87 40.2
Oeu042401.1 Olea europaea HOM05D000042 ORTHO05D000028 6.3e-07 57.4 86 39.5
arahy.Tifrunner.gnm1.ann1.9Y4GVD Arachis hypogaea HOM05D000042 ORTHO05D000028 8.3e-07 57.0 85 41.2
arahy.Tifrunner.gnm1.ann1.B128UN Arachis hypogaea HOM05D000042 ORTHO05D000028 8.3e-07 57.0 85 41.2
Ciclev10027571m.g Citrus clementina HOM05D000042 ORTHO05D000028 8.3e-07 57.0 82 42.7
Nitab4.5_0003336g0080 Nicotiana tabacum HOM05D000042 ORTHO05D000028 8.3e-07 57.0 80 40.0
Oeu040877.1 Olea europaea HOM05D000042 ORTHO05D000028 8.3e-07 57.0 87 40.2
Rhsim05G0099300 Rhododendron simsii HOM05D000042 ORTHO05D000028 8.3e-07 57.0 87 40.2
CSS0006612 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.1e-06 56.6 90 41.1
CSS0019120 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.1e-06 56.6 90 42.2
CSS0035434 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.1e-06 56.6 90 41.1
Duzib264G1044 Durio zibethinus HOM05D000042 ORTHO05D000028 1.1e-06 56.6 86 39.5
MD01G1043900 Malus domestica HOM05D000042 ORTHO05D000028 1.1e-06 56.6 73 41.1
VMungo1215G1073 Vigna mungo HOM05D000042 ORTHO05D000028 1.1e-06 56.6 84 44.0
CSS0006041 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.4e-06 56.2 90 40.0
Glyma.01G020500 Glycine max HOM05D000042 ORTHO05D000028 1.4e-06 56.2 80 42.5
Glyma.09G201700 Glycine max HOM05D000042 ORTHO05D000028 1.4e-06 56.2 79 41.8
MD15G1389800 Malus domestica HOM05D000042 ORTHO05D000028 1.8e-06 55.8 75 44.0
PGR102G2091 Punica granatum HOM05D000042 ORTHO05D000028 1.8e-06 55.8 80 40.0
Rhsim08G0088000 Rhododendron simsii HOM05D000042 ORTHO05D000028 1.8e-06 55.8 84 40.5
CSS0030154 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 2.4e-06 55.5 87 40.2
Manes.07G046300 Manihot esculenta HOM05D000042 ORTHO05D000028 2.4e-06 55.5 86 38.4
MD10G1056200 Malus domestica HOM05D000042 ORTHO05D000028 3.1e-06 55.1 79 41.8
CiPaw.05G027800 Carya illinoinensis HOM05D000042 ORTHO05D000028 4.1e-06 54.7 90 40.0
arahy.Tifrunner.gnm1.ann1.61ZCUX Arachis hypogaea HOM05D000042 ORTHO05D000028 5.4e-06 54.3 73 42.5
PGR042G1523 Punica granatum HOM05D000042 ORTHO05D000028 5.4e-06 54.3 88 37.5
vmacro04629 Vaccinium macrocarpon HOM05D000042 ORTHO05D000028 5.4e-06 54.3 75 42.7
GSVIVG01038474001 Vitis vinifera HOM05D000042 ORTHO05D000028 5.4e-06 54.3 88 40.9
MD08G1206400 Malus domestica HOM05D000042 ORTHO05D000028 7.0e-06 53.9 85 40.0
Potri.009G079000 Populus trichocarpa HOM05D000042 ORTHO05D000028 7.0e-06 53.9 86 40.7
Sabra09G0061000 Salix brachista HOM05D000042 ORTHO05D000028 7.0e-06 53.9 78 39.7
Sopen12g030100 Solanum pennellii HOM05D000042 ORTHO05D000028 7.0e-06 53.9 87 37.9
ClCG10G009840 Citrullus lanatus HOM05D000042 ORTHO05D000028 9.2e-06 53.5 87 37.9
DCAR_010757 Daucus carota HOM05D000042 ORTHO05D000028 9.2e-06 53.5 81 39.5
Phvul.002G143866 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 9.2e-06 53.5 79 41.8


User provided reference genes

Program Settings