Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 1.6e-269 932.2 460 100.0
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 2.7e-237 825.1 461 89.4
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 2.9e-231 805.1 461 88.3
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 1.2e-229 799.7 459 88.0
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 1.6e-229 799.3 463 87.7
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 1.7e-228 795.8 461 87.4
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 2.3e-228 795.4 463 87.0
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 8.7e-228 793.5 460 86.7
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 2.5e-227 792.0 463 86.4
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 5.8e-224 780.8 461 86.1
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 1.2e-221 773.1 461 86.6
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 2.1e-218 762.3 463 82.9
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 2.3e-188 662.5 460 73.5
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 6.5e-159 564.7 455 62.2
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 7.2e-158 561.2 458 62.4
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 4.0e-156 555.4 466 60.9
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 8.8e-156 554.3 459 61.7
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 7.5e-155 551.2 462 59.7
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 1.7e-154 550.1 458 60.3
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 1.1e-153 547.4 460 61.7
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 2.4e-153 546.2 439 61.7
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 2.4e-153 546.2 462 61.5
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 4.1e-153 545.4 442 63.8
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 5.4e-153 545.0 469 58.6
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 9.2e-153 544.3 465 59.6
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 2.0e-152 543.1 472 59.1
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.3e-151 540.4 465 59.4
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 2.3e-151 539.7 460 59.1
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 2.3e-151 539.7 462 59.5
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 2.3e-151 539.7 465 59.4
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 2.9e-151 539.3 460 59.1
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 1.1e-150 537.3 457 58.9
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 4.3e-150 535.4 446 61.2
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 4.3e-150 535.4 458 58.1
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 4.3e-150 535.4 458 59.2
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 7.3e-150 534.6 464 61.0
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 6.1e-149 531.6 480 57.9
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 1.4e-148 530.4 457 58.9
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 1.4e-148 530.4 468 59.0
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 8.9e-148 527.7 458 58.1
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 1.5e-147 526.9 468 58.5
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 4.4e-147 525.4 464 58.2
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 7.5e-147 524.6 464 58.2
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.3e-146 523.9 453 59.2
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 1.4e-145 520.4 432 59.3
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 1.4e-145 520.4 468 58.5
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 2.4e-145 519.6 456 58.6
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 2.4e-145 519.6 464 57.8
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 2.4e-145 519.6 476 57.6
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 2.0e-144 516.5 478 57.7
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 2.0e-144 516.5 473 57.9
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 7.3e-142 508.1 480 54.8
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 1.6e-141 506.9 480 54.8
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 4.7e-141 505.4 475 55.6
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 2.3e-140 503.1 433 59.8
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.1e-140 502.7 455 58.0
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 3.1e-140 502.7 483 53.8
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 1.2e-139 500.7 460 56.5
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 2.0e-139 500.0 476 56.5
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 4.4e-139 498.8 453 57.0
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 7.5e-139 498.0 461 55.7
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 4.9e-138 495.4 397 61.5
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 6.4e-138 495.0 479 55.5
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 6.4e-138 495.0 472 54.7
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 1.9e-137 493.4 494 52.2
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 5.4e-137 491.9 475 55.2
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 5.4e-137 491.9 468 54.9
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 7.0e-137 491.5 506 52.6
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 9.2e-137 491.1 559 48.1
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 1.6e-136 490.3 470 54.9
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 6.0e-136 488.4 482 54.8
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 1.3e-135 487.3 446 57.0
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 1.7e-135 486.9 432 58.1
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 2.3e-135 486.5 459 54.0
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 1.1e-134 484.2 479 54.7
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 1.2e-133 480.7 371 66.3
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 4.7e-133 478.8 477 52.6
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 1.4e-132 477.2 518 51.5
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.3e-132 476.5 503 51.7
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 3.1e-132 476.1 458 54.1
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 3.4e-131 472.6 473 53.9
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 9.8e-131 471.1 469 54.4
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 2.2e-130 469.9 451 61.6
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 2.7e-128 463.0 388 60.8
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 6.8e-124 448.4 474 51.3
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 3.4e-123 446.0 439 52.2
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 7.1e-121 438.3 490 49.6
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 9.2e-121 438.0 438 52.5
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 1.7e-119 433.7 474 50.4
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 6.6e-119 431.8 381 58.0
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.8e-116 423.7 327 65.7
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 2.1e-112 410.2 363 59.0
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 6.6e-111 405.2 470 48.9
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 2.4e-105 386.7 320 60.3
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 1.1e-102 377.9 468 45.5
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 3.7e-101 372.9 445 48.1
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 4.0e-100 369.4 353 55.0
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 4.0e-100 369.4 353 55.0
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 4.9e-98 362.5 401 48.6
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 5.8e-91 339.0 339 52.8
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 3.8e-90 336.3 478 41.0
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 2.1e-88 330.5 289 57.4
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 4.3e-86 322.8 468 42.1
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 5.7e-86 322.4 293 56.3
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 1.2e-75 288.1 349 44.1
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 2.0e-75 287.3 219 62.6
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 1.3e-74 284.6 223 61.9
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 2.8e-69 266.9 149 86.6
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 2.0e-67 260.8 453 38.6
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 4.5e-67 259.6 500 34.2
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 7.9e-64 248.8 350 41.4
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 4.4e-62 243.0 160 81.2
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 4.4e-62 243.0 160 81.2
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 2.8e-53 213.8 381 37.5
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 8.2e-53 212.2 308 41.2
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.1e-52 211.8 223 52.0
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.9e-49 201.1 173 59.5
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 4.8e-45 186.4 168 56.0
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 6.3e-45 186.0 226 48.7
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 1.5e-38 164.9 158 56.3
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 2.7e-35 154.1 161 48.4
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 5.9e-35 152.9 179 46.4
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 1.0e-31 142.1 156 46.8
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 1.3e-29 135.2 114 60.5
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 1.0e-26 125.6 490 26.9
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 6.4e-21 106.3 116 51.7
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 1.6e-16 91.7 105 44.8
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 8.1e-16 89.4 105 45.7
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.1e-12 79.0 52 73.1
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.9e-12 78.2 52 73.1
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.2e-11 75.5 67 56.7
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.3e-10 72.0 83 48.2


User provided reference genes

Program Settings