Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 0.0e+00 1440.6 721 100.0
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 0.0e+00 1362.8 721 93.8
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1323.1 723 91.1
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 0.0e+00 1320.4 723 91.0
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 0.0e+00 1316.6 723 90.7
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 0.0e+00 1313.9 722 90.7
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1313.9 723 90.5
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 0.0e+00 1313.9 723 90.0
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 0.0e+00 1300.0 722 89.6
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 0.0e+00 1297.7 722 89.9
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 0.0e+00 1295.8 721 89.5
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 0.0e+00 1227.2 734 82.7
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 0.0e+00 1169.5 724 80.0
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 2.4e-301 1038.5 719 69.1
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.2e-300 1036.2 719 68.8
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 6.6e-299 1030.4 724 68.5
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 1.6e-297 1025.8 721 68.5
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 1.4e-296 1022.7 724 68.8
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 1.2e-295 1019.6 723 69.0
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 2.4e-293 1011.9 709 68.8
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 3.2e-293 1011.5 720 67.9
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 9.2e-293 1010.0 715 68.4
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 7.8e-292 1006.9 719 67.7
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 1.3e-291 1006.1 719 67.7
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.3e-291 1006.1 724 67.5
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 3.9e-291 1004.6 720 67.6
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 6.6e-291 1003.8 721 67.8
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 4.3e-290 1001.1 721 67.8
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 2.4e-288 995.3 722 66.8
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 3.1e-288 995.0 726 67.1
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 3.4e-287 991.5 719 66.9
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 9.9e-287 989.9 725 67.2
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 6.4e-286 987.3 720 66.4
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 3.2e-285 984.9 720 67.4
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 2.1e-284 982.2 730 66.0
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 6.0e-284 980.7 721 67.1
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 3.3e-282 974.9 725 66.5
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 3.2e-277 958.4 722 64.4
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 3.2e-277 958.4 722 64.5
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 6.0e-276 954.1 722 64.7
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 1.1e-274 949.9 723 63.9
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.5e-274 949.5 728 64.6
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 4.3e-274 948.0 707 65.2
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 9.6e-274 946.8 707 64.5
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 3.6e-273 944.9 725 64.1
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.8e-272 942.6 724 64.6
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 1.2e-271 939.9 711 63.9
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 2.6e-271 938.7 722 64.1
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 3.8e-270 934.9 725 63.7
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 4.9e-270 934.5 719 63.6
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 1.1e-269 933.3 725 63.6
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 1.4e-269 932.9 719 62.6
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.9e-269 932.6 690 64.6
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 2.4e-269 932.2 727 63.0
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.2e-268 929.9 687 65.1
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 1.2e-268 929.9 702 64.0
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 2.1e-268 929.1 716 64.1
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 6.0e-268 927.5 716 63.8
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 2.3e-267 925.6 709 63.2
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 1.3e-265 919.8 703 63.4
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 3.7e-265 918.3 724 63.3
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 1.1e-264 916.8 663 66.8
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 3.8e-262 908.3 720 63.1
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.1e-261 906.7 726 61.7
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 4.2e-261 904.8 719 61.9
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 7.1e-261 904.0 705 63.3
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 9.3e-261 903.7 633 69.4
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 1.1e-258 896.7 730 62.1
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 5.7e-258 894.4 737 60.1
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 5.7e-258 894.4 721 61.0
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 3.1e-256 888.6 731 59.4
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 3.1e-256 888.6 726 60.6
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 2.6e-255 885.6 652 65.8
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 3.2e-253 878.6 709 61.4
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 7.2e-253 877.5 706 63.0
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 2.1e-252 875.9 721 59.9
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 1.5e-250 869.8 729 59.4
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 7.4e-250 867.5 629 66.8
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 4.8e-249 864.8 636 66.5
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 4.5e-247 858.2 625 66.2
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 5.1e-243 844.7 737 56.9
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 1.1e-242 843.6 629 64.1
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.3e-242 842.0 987 48.4
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 1.3e-241 840.1 730 58.2
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 2.4e-240 835.9 700 58.7
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 1.5e-239 833.2 733 56.3
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 3.4e-239 832.0 589 67.6
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 3.4e-239 832.0 727 56.9
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.7e-238 829.7 719 58.6
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 1.1e-234 817.0 541 71.5
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.7e-230 803.1 588 66.0
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 8.2e-225 784.3 568 65.7
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.8e-224 783.1 700 57.0
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 1.2e-220 770.4 844 49.1
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.4e-208 729.6 981 45.6
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 4.6e-199 698.7 724 52.6
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 1.6e-196 690.3 381 88.5
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.6e-180 637.1 453 67.3
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 1.5e-170 604.0 728 44.5
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 4.9e-169 599.0 485 60.8
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 2.1e-159 567.0 703 43.8
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 1.8e-142 510.8 639 43.8
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 9.6e-141 505.0 362 64.9
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 7.7e-130 468.8 444 53.4
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 2.1e-95 354.4 281 60.1
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 4.5e-90 336.7 225 73.3
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 8.0e-87 325.9 254 62.6
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.1e-80 305.4 248 61.3
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 4.4e-77 293.5 290 54.1
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 5.6e-64 250.0 270 50.4
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 8.9e-62 242.7 148 74.3
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.4e-59 234.6 166 71.7
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.1e-43 182.6 258 41.5
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.5e-37 162.2 230 41.3
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.0e-37 161.8 257 37.4
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 4.5e-37 160.6 154 53.9
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 4.3e-32 144.1 169 42.6
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 2.4e-30 138.3 109 67.9
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 2.2e-28 131.7 131 54.2
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.9e-27 128.6 114 54.4
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 2.5e-27 128.3 109 65.1
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.5e-27 127.1 154 44.2
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 7.1e-27 126.7 109 64.2
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 1.6e-26 125.6 89 67.4
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-25 122.5 84 70.2
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.8e-25 122.1 84 70.2
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 1.1e-22 112.8 107 53.3
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.5e-21 109.0 97 56.7
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 4.5e-21 107.5 98 52.0
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 2.2e-20 105.1 71 67.6
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 3.8e-20 104.4 74 70.3
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 7.9e-18 96.7 89 60.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 1.3e-17 95.9 57 84.2
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 1.3e-17 95.9 57 84.2
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 1.3e-17 95.9 622 21.4
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 2.3e-17 95.1 70 64.3
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 5.1e-17 94.0 57 82.5
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.1e-16 92.8 66 65.2
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 1.9e-16 92.0 91 50.5
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 3.7e-15 87.8 55 81.8
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 3.7e-15 87.8 58 67.2
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 4.8e-15 87.4 61 65.6
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.2e-13 82.8 64 65.6
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 1.5e-13 82.4 53 69.8
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-13 81.6 254 28.7
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 3.4e-13 81.3 51 80.4
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 5.9e-13 80.5 55 63.6
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 3.8e-12 77.8 52 71.2
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.8e-12 77.8 71 54.9
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 4.2e-11 74.3 129 36.4
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 7.2e-11 73.6 167 29.9
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 3.9e-09 67.8 51 66.7
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 1.1e-08 66.2 353 21.2
BolC7t40477H Brassica oleracea HOM05D048856 ORTHO05D042196 2.0e-08 65.5 52 61.5
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 2.0e-08 65.5 48 64.6
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 3.3e-08 64.7 71 49.3
C07p00260 Brassica napus HOM05D048856 ORTHO05D042196 2.8e-07 61.6 52 61.5
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 6.3e-07 60.5 74 48.6
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.4e-06 58.5 42 61.9


User provided reference genes

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