Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 0.0e+00 1101.7 535 100.0
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 5.8e-292 1006.9 565 87.3
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 5.4e-290 1000.3 566 86.7
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.1e-289 998.4 566 86.4
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 4.6e-289 997.3 566 86.9
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 7.8e-289 996.5 566 86.7
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 1.7e-288 995.3 566 86.7
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 1.7e-288 995.3 562 87.0
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 5.6e-287 990.3 566 86.2
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 9.6e-287 989.6 566 86.2
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 3.1e-285 984.6 565 85.8
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 2.6e-284 981.5 565 85.0
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 2.5e-266 921.8 565 80.7
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.4e-261 906.0 565 78.4
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.2e-259 898.7 548 80.1
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.4e-258 896.0 566 77.4
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 9.3e-258 893.3 562 78.5
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 1.0e-256 889.8 562 78.3
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 1.5e-255 885.9 563 77.6
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 6.3e-254 880.6 555 78.4
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.4e-248 862.8 555 77.3
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 3.9e-248 861.3 554 76.9
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 3.9e-248 861.3 562 76.2
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 3.9e-248 861.3 562 76.3
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 3.9e-248 861.3 562 76.2
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 4.4e-247 857.8 553 74.1
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 1.3e-246 856.3 554 74.2
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 1.3e-246 856.3 555 74.4
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 1.8e-245 852.4 552 73.4
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 5.3e-245 850.9 554 73.6
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 4.5e-244 847.8 571 72.2
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 5.9e-244 847.4 555 73.9
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 1.3e-243 846.3 567 71.6
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 1.7e-243 845.9 555 73.7
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 5.0e-243 844.3 554 73.3
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 5.0e-243 844.3 555 73.9
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 8.5e-243 843.6 551 73.0
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 1.4e-242 842.8 555 73.5
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 1.4e-242 842.8 555 73.0
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 4.2e-242 841.3 557 73.2
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 2.1e-241 839.0 545 73.4
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 3.6e-241 838.2 554 72.2
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 3.6e-241 838.2 555 72.6
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 8.8e-240 833.6 548 73.4
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.6e-239 832.0 567 73.7
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.3e-239 831.6 558 72.2
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 7.4e-239 830.5 548 73.4
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 9.7e-239 830.1 531 74.8
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 9.7e-239 830.1 548 73.4
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.3e-238 829.7 566 71.6
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.2e-238 828.9 515 79.8
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 6.3e-238 827.4 555 72.4
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.8e-237 825.9 556 71.2
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 5.3e-237 824.3 548 71.4
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 5.3e-237 824.3 549 73.0
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 5.9e-236 820.8 560 71.2
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 7.7e-236 820.5 560 70.2
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 1.3e-235 819.7 544 75.2
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 2.2e-235 818.9 562 70.6
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.5e-234 816.2 560 71.2
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 1.9e-234 815.8 552 70.5
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.9e-234 815.8 548 72.3
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 3.2e-234 815.1 545 71.4
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 4.2e-234 814.7 546 71.1
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 7.2e-234 813.9 546 71.2
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 7.2e-234 813.9 516 76.2
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 2.1e-233 812.4 560 69.5
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 3.6e-233 811.6 576 68.2
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 3.6e-233 811.6 548 70.6
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 4.7e-233 811.2 554 70.2
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 1.0e-232 810.1 554 69.3
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.8e-232 809.3 523 74.2
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.3e-232 808.9 567 69.7
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 3.0e-232 808.5 560 69.8
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 4.0e-232 808.1 558 69.5
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 8.8e-232 807.0 562 70.5
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 2.6e-231 805.4 579 67.7
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 2.6e-231 805.4 546 70.9
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 3.3e-231 805.1 548 69.5
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 5.7e-231 804.3 569 69.6
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 5.7e-231 804.3 535 71.8
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 9.7e-231 803.5 560 69.1
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 9.7e-231 803.5 552 70.1
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 1.3e-230 803.1 545 70.6
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 1.7e-230 802.7 592 66.2
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.7e-230 802.7 545 70.8
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 2.8e-230 802.0 517 74.3
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 2.8e-230 802.0 539 72.0
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 9.1e-229 797.0 565 67.6
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.6e-228 796.2 578 68.9
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.3e-227 793.1 545 69.7
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 2.9e-227 792.0 556 67.3
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 2.9e-227 792.0 556 69.1
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 3.8e-227 791.6 543 70.0
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 5.0e-227 791.2 561 69.5
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 7.2e-226 787.3 532 70.7
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 9.4e-226 786.9 552 68.5
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 2.3e-224 782.3 548 68.1
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 5.2e-224 781.2 552 68.3
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 1.2e-223 780.0 548 68.4
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 1.5e-223 779.6 548 68.8
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 9.8e-223 776.9 533 70.2
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 4.8e-222 774.6 550 67.6
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 4.1e-221 771.5 548 68.4
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 5.4e-221 771.2 542 68.8
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 7.0e-221 770.8 579 66.1
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.5e-220 768.5 550 68.5
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.0e-219 766.9 547 67.8
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 5.5e-218 761.1 560 65.7
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 8.8e-216 753.8 553 66.4
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.4e-213 746.5 539 68.8
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 5.4e-213 744.6 560 67.0
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.7e-211 739.6 548 67.9
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 7.3e-210 734.2 510 70.0
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.7e-209 731.5 504 71.0
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 2.9e-206 722.2 495 71.1
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.5e-199 699.9 486 69.8
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 2.6e-199 699.1 526 66.7
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 1.7e-198 696.4 514 66.1
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 9.2e-197 690.6 526 65.2
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 1.6e-193 679.9 566 62.7
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 3.6e-193 678.7 563 61.5
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 3.6e-193 678.7 557 60.5
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 6.4e-182 641.3 454 69.4
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 4.9e-174 615.1 588 55.6
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.4e-173 613.6 567 57.3
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 1.2e-172 610.5 559 57.1
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 4.0e-168 595.5 566 56.7
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 5.8e-167 591.7 416 70.4
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.2e-133 479.6 278 79.9
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 4.2e-117 426.0 333 65.5
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.4e-112 411.0 294 68.7
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.2e-111 407.9 510 47.1
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.5e-109 401.0 263 75.3
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.3e-102 377.9 321 59.5
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.0e-99 366.7 349 55.6
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.2e-99 365.9 217 79.7
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 8.9e-99 365.2 334 58.1
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 6.3e-97 359.0 217 71.9
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 1.5e-77 294.7 198 73.2
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 1.2e-76 291.6 290 53.1
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 6.8e-75 285.8 564 33.0
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.4e-64 251.5 283 48.8
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 4.7e-60 236.5 145 71.7
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.5e-58 231.5 252 53.2
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 1.3e-57 228.4 228 50.4
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 4.9e-57 226.5 398 32.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.8e-52 210.7 201 56.7
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 1.6e-44 184.9 125 69.6
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.3e-30 137.9 128 50.8
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 4.3e-29 133.7 110 54.5
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 7.4e-29 132.9 105 59.0
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 3.4e-26 124.0 100 56.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 1.0e-25 122.5 106 53.8
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.6e-23 115.2 81 61.7
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 1.4e-22 112.1 102 58.8
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 3.1e-19 100.9 54 75.9
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 9.1e-11 72.8 43 74.4
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 1.2e-10 72.4 64 50.0
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 2.1e-07 61.6 73 35.6
Phvul.007G097800 Phaseolus vulgaris HOM05D000459 ORTHO05D000038 1.4e-06 58.9 59 37.3
Gohir.A11G052532 Gossypium hirsutum HOM05D000082 ORTHO05D000038 2.3e-06 58.2 54 38.9
Os12g0113700 Oryza sativa ssp. japonica HOM05D000157 ORTHO05D000311 3.0e-06 57.8 76 36.8
BcaB07g33366 Brassica carinata HOM05D000157 ORTHO05D001065 3.9e-06 57.4 74 32.4
COL.COLO4_10976 Corchorus olitorius HOM05D000082 ORTHO05D008126 3.9e-06 57.4 76 38.2
HanXRQChr08g0220981 Helianthus annuus HOM05D000082 ORTHO05D001639 3.9e-06 57.4 55 34.5
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 3.9e-06 57.4 61 37.7
CsaV3_5G032780 Cucumis sativus L. HOM05D000082 ORTHO05D000038 5.2e-06 57.0 55 38.2
Gohir.D11G055901 Gossypium hirsutum HOM05D000082 ORTHO05D000038 5.2e-06 57.0 54 37.0
Gorai.007G061100 Gossypium raimondii HOM05D000082 ORTHO05D000038 5.2e-06 57.0 54 37.0
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 6.7e-06 56.6 54 40.7
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 6.7e-06 56.6 69 39.1
HPP92_027424 Vanilla planifolia HOM05D004509 ORTHO05D005568 6.7e-06 56.6 65 41.5
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 8.8e-06 56.2 56 37.5
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 8.8e-06 56.2 56 37.5
Os07g0631200 Oryza sativa ssp. japonica HOM05D000082 ORTHO05D000038 8.8e-06 56.2 52 44.2
VMungo1215G2860 Vigna mungo HOM05D000459 ORTHO05D000038 8.8e-06 56.2 56 37.5


User provided reference genes

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