Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 9.2e-175 616.7 292 100.0
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 1.4e-146 523.1 292 83.9
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 4.9e-144 514.6 292 82.2
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 8.4e-144 513.8 292 83.2
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 2.4e-143 512.3 292 81.8
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 4.2e-143 511.5 287 83.6
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 9.3e-143 510.4 292 81.2
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.0e-133 480.3 290 76.6
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.8e-133 479.6 281 81.1
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 6.7e-133 477.6 290 77.2
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.5e-132 476.5 290 76.9
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.9e-132 476.1 288 77.1
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 2.5e-132 475.7 290 76.9
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 9.6e-132 473.8 291 75.9
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 8.2e-131 470.7 289 75.1
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 8.2e-131 470.7 289 75.1
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 8.2e-131 470.7 289 75.1
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 9.0e-130 467.2 281 79.4
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 5.9e-129 464.5 293 73.4
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-128 463.4 293 74.1
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 1.1e-127 460.3 293 73.0
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 1.2e-126 456.8 307 71.3
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 3.6e-126 455.3 294 72.1
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 6.1e-126 454.5 319 69.6
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 5.7e-124 448.0 298 71.8
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 7.4e-124 447.6 319 69.0
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 1.4e-122 443.4 283 73.9
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 5.3e-122 441.4 319 67.7
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 6.9e-122 441.0 292 72.6
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 3.8e-120 435.3 283 73.1
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 1.4e-119 433.3 250 82.0
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 9.4e-119 430.6 291 70.4
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 2.3e-117 426.0 286 72.4
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.3e-117 426.0 286 72.4
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.3e-117 426.0 286 72.4
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 3.9e-117 425.2 283 72.1
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 6.7e-117 424.5 286 72.0
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.7e-115 419.9 292 67.8
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 1.4e-114 416.8 293 68.3
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.7e-112 409.8 290 67.6
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 2.8e-107 392.5 281 67.3
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 1.3e-104 383.6 270 65.2
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 5.5e-103 378.3 300 58.7
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 7.2e-103 377.9 310 58.1
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 9.4e-103 377.5 294 59.9
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 9.4e-103 377.5 294 59.9
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 2.1e-102 376.3 231 70.1
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.1e-102 376.3 294 60.5
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 3.6e-102 375.6 294 59.2
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 3.6e-102 375.6 294 59.5
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.0e-101 374.0 316 57.0
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 1.4e-101 373.6 301 59.8
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.8e-101 373.2 307 58.0
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 6.7e-101 371.3 297 59.3
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 2.0e-100 369.8 299 57.9
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 2.6e-100 369.4 231 68.4
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 3.3e-100 369.0 287 59.2
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 3.3e-100 369.0 294 58.2
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 7.5e-100 367.9 246 67.1
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 9.7e-100 367.5 246 66.3
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 1.7e-99 366.7 278 60.8
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 2.8e-99 365.9 287 58.5
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 8.2e-99 364.4 282 57.4
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 8.2e-99 364.4 287 58.5
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 8.2e-99 364.4 277 59.6
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 8.2e-99 364.4 265 62.3
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 8.2e-99 364.4 299 56.9
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 8.2e-99 364.4 299 56.9
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 8.2e-99 364.4 299 56.9
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 1.8e-98 363.2 233 67.4
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 1.8e-98 363.2 300 56.3
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 3.1e-98 362.5 297 54.2
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 3.1e-98 362.5 309 56.6
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 4.1e-98 362.1 299 55.9
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 5.3e-98 361.7 306 57.2
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 5.3e-98 361.7 249 63.1
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 9.1e-98 360.9 262 61.8
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.2e-97 360.5 276 60.5
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.6e-97 360.1 266 61.3
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 1.6e-97 360.1 301 56.5
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 1.6e-97 360.1 281 58.0
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 2.7e-97 359.4 254 61.8
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 3.5e-97 359.0 288 59.0
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 5.9e-97 358.2 291 57.4
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 7.7e-97 357.8 234 67.1
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 5.0e-96 355.1 270 60.0
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 1.1e-95 354.0 271 57.6
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 1.9e-95 353.2 282 58.2
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 2.5e-95 352.8 269 59.5
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 3.2e-95 352.4 277 58.5
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 5.5e-95 351.7 283 57.6
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 5.5e-95 351.7 228 68.0
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 9.4e-95 350.9 236 64.4
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 2.1e-94 349.7 256 60.9
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 6.1e-94 348.2 292 56.2
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 1.4e-93 347.1 298 54.4
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.4e-93 347.1 304 53.9
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 2.3e-93 346.3 238 61.8
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 6.8e-93 344.7 255 58.8
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 6.8e-93 344.7 236 63.1
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 6.8e-93 344.7 273 57.5
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 8.8e-93 344.4 283 54.8
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 4.4e-92 342.0 227 66.1
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 5.7e-92 341.7 234 64.1
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 9.8e-92 340.9 280 57.1
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.3e-91 340.5 268 56.0
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 4.1e-90 335.5 282 54.6
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 5.4e-90 335.1 234 61.5
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 2.0e-89 333.2 262 58.0
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.5e-89 332.0 270 57.0
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 7.7e-89 331.3 232 63.8
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 2.2e-88 329.7 273 52.7
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.2e-88 329.7 231 60.2
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 3.8e-88 328.9 238 62.6
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 3.8e-88 328.9 231 59.7
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 1.5e-87 327.0 249 56.2
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 9.5e-87 324.3 244 60.2
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 9.5e-87 324.3 291 53.3
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 6.1e-86 321.6 234 59.8
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 6.8e-85 318.2 216 63.4
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 1.5e-84 317.0 266 53.4
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 7.5e-84 314.7 241 58.9
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 3.7e-83 312.4 200 72.0
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 8.3e-83 311.2 230 60.0
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 1.4e-82 310.5 227 57.7
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 3.1e-82 309.3 240 58.3
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.2e-81 307.4 257 51.0
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 2.0e-81 306.6 241 58.1
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 4.5e-81 305.4 222 60.4
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.5e-81 305.4 293 48.8
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 4.5e-81 305.4 232 57.8
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 7.7e-81 304.7 196 69.4
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 3.8e-80 302.4 211 62.6
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 8.9e-77 291.2 299 48.5
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 2.0e-76 290.0 239 53.6
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.3e-75 287.3 279 48.7
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 4.6e-73 278.9 228 53.9
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 5.9e-73 278.5 195 63.6
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.0e-72 276.2 276 49.6
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 2.8e-70 269.6 229 56.8
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 4.0e-69 265.8 226 53.5
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 3.5e-65 252.7 217 53.9
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 6.0e-65 251.9 275 44.7
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 7.8e-65 251.5 278 46.4
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 2.3e-64 250.0 218 52.3
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 3.1e-61 239.6 228 47.4
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 4.0e-61 239.2 266 46.2
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 6.4e-59 231.9 231 46.3
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.9e-58 230.3 240 47.1
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 2.4e-58 229.9 232 46.6
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 2.4e-58 229.9 238 46.2
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.6e-57 227.3 232 45.7
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 3.5e-57 226.1 153 64.1
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 4.6e-57 225.7 226 46.0
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 3.0e-56 223.0 247 41.3
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 3.9e-56 222.6 257 44.7
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.6e-54 217.2 174 59.8
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 8.1e-54 214.9 244 42.6
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 5.2e-53 212.2 260 41.2
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 2.2e-51 206.8 241 41.1
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 3.2e-50 203.0 191 49.2
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 1.6e-49 200.7 236 41.5
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.7e-49 199.9 105 84.8
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 3.9e-48 196.1 225 47.1
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.1e-47 194.5 130 63.8
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 1.1e-47 194.5 238 40.3
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 1.9e-47 193.7 191 46.6
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 2.1e-46 190.3 142 61.3
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 1.8e-45 187.2 227 41.9
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 1.4e-42 177.6 315 33.3
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 8.7e-40 168.3 152 48.7
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 3.4e-36 156.4 109 61.5
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 4.6e-33 146.0 95 67.4
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 8.7e-32 141.7 87 71.3
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 5.5e-18 95.9 49 81.6
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 8.2e-14 82.0 97 45.4
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 4.5e-12 76.3 74 48.6
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 2.5e-07 60.5 41 61.0


User provided reference genes

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