Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 5117.7 2619 100.0
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 3981.8 2660 79.1
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 3964.1 2695 78.0
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 3938.3 2662 78.2
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 3918.6 2697 77.2
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3810.4 2618 76.8
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 3712.9 2661 74.3
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 3620.1 2457 77.8
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 3486.8 2629 70.9
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3422.9 2615 71.8
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 3320.4 2605 70.3
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 3234.5 2642 69.0
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 3167.5 2606 67.8
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 2982.6 2253 71.8
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 2865.9 2654 59.2
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 2848.5 2249 69.7
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 2765.3 2536 62.5
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2129.4 2697 47.1
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2016.9 2673 45.6
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 1996.1 2702 44.5
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 1951.0 2707 43.8
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 1942.2 2693 43.6
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 1931.4 2689 43.1
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 1923.7 2671 43.8
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1915.6 2687 43.7
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 1914.8 2696 43.4
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 1912.5 2662 43.6
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 1908.6 2695 42.9
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 1889.4 2677 42.9
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1874.8 2664 43.1
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 1847.8 2745 42.8
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 1833.2 2699 41.9
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 1817.0 2722 42.2
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1812.7 2673 42.0
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 1781.9 2678 41.2
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 1766.5 2314 45.3
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 1763.4 2777 41.1
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 1739.9 2670 40.4
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 1726.8 2595 41.8
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1711.4 2673 40.0
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1711.4 2680 41.0
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 1703.0 2820 40.5
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 0.0e+00 1688.7 1221 74.0
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 1682.9 2747 39.9
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 1678.7 2659 39.3
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1642.5 2667 40.0
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1627.8 2670 39.3
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 1621.3 2673 40.6
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1612.8 2665 39.1
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1600.5 2697 38.0
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1593.6 2652 38.5
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1587.0 2668 38.2
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1575.8 2646 38.9
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1567.7 2674 38.0
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1567.4 2671 37.8
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1562.4 2699 38.0
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1555.0 2650 38.9
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1554.3 2684 38.2
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1552.0 2665 38.5
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1540.0 2659 38.5
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1537.7 2663 38.3
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1535.8 2663 37.9
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1532.3 2671 38.0
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1530.4 2646 38.7
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 1529.2 2442 39.8
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1527.3 2722 37.9
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1526.9 2737 37.3
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1523.8 2658 38.3
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1517.7 2660 38.2
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1509.2 2649 39.1
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1501.5 2756 36.7
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1489.2 2759 36.6
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1485.3 2698 37.9
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1474.5 2677 37.4
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1470.3 2617 38.1
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1465.7 2692 36.9
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1463.7 2690 37.2
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1462.6 2617 38.7
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1451.0 2655 36.6
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1441.0 2747 36.2
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1423.7 2731 35.9
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1420.2 2651 36.3
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1394.8 1860 45.2
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1382.5 2842 34.5
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1332.8 2668 35.0
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1306.2 2212 39.0
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1293.9 2653 34.0
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1276.9 2408 35.9
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1261.9 2689 34.1
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 0.0e+00 1196.8 904 71.9
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1194.1 2127 37.6
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1143.6 2027 36.7
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1134.4 1752 40.5
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1133.6 2360 34.9
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1077.0 2040 36.4
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1076.6 2430 32.9
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 5.4e-311 1072.4 2200 36.3
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 4.0e-261 906.7 1807 35.4
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.1e-254 884.4 784 63.0
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 2.5e-231 807.7 1789 33.5
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 6.9e-229 799.7 1070 47.4
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 6.7e-200 703.4 856 47.5
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 8.8e-200 703.0 908 46.3
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.9e-194 685.3 488 75.6
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 2.1e-185 655.2 812 46.2
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 1.1e-178 632.9 2792 25.8
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 4.9e-166 590.9 2787 24.8
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 3.7e-158 564.7 669 49.5
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 8.6e-155 553.5 540 59.4
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 9.5e-154 550.1 2599 24.8
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 4.4e-151 541.2 561 54.2
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 3.2e-149 535.0 2891 24.7
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 3.2e-149 535.0 2609 24.1
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.2e-148 533.1 1139 33.5
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 2.7e-140 505.4 351 75.8
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 8.1e-137 493.8 662 45.2
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.0e-127 462.6 329 78.1
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 4.9e-126 458.0 571 47.6
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.1e-120 438.7 356 67.4
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.3e-118 433.3 924 33.2
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.2e-117 428.3 792 36.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.2e-110 406.0 1127 30.9
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 2.5e-106 392.5 525 43.4
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.9e-98 366.3 1143 29.4
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.3e-98 365.5 804 34.1
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 5.9e-95 354.8 719 36.4
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 6.3e-89 334.7 419 46.5
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 9.4e-85 320.9 310 58.1
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 7.2e-61 241.5 202 59.4
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 4.5e-47 195.7 668 28.0
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 5.0e-46 192.2 235 46.4
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 9.5e-45 188.0 185 57.8
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 8.9e-43 181.4 336 34.8
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 1.5e-42 180.6 181 51.4
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 2.1e-36 160.2 348 33.0
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 8.3e-33 148.3 349 33.0
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 7.0e-32 145.2 281 35.9
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 2.3e-30 140.2 248 40.3
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 3.9e-30 139.4 213 38.5
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 3.9e-30 139.4 185 44.3
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 1.5e-29 137.5 150 50.0
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 6.8e-27 128.6 212 41.5
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 2.4e-24 120.2 121 46.3
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 7.8e-23 115.2 139 41.7
BraA10t45354Z Brassica rapa HOM05D003876 ORTHO05D043045 1.0e-22 114.8 117 61.5
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.7e-17 97.4 205 32.7
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 1.2e-15 91.3 84 51.2
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.6e-15 90.9 155 32.3
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 2.1e-15 90.5 124 44.4
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 6.6e-14 85.5 395 23.3
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 6.6e-14 85.5 395 23.3
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 1.6e-12 80.9 79 49.4
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 2.8e-12 80.1 93 45.2
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 2.8e-12 80.1 144 37.5
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 1.8e-11 77.4 66 65.2
C03p92150 Brassica napus HOM05D001133 ORTHO05D000941 2.4e-11 77.0 63 61.9
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 4.0e-11 76.3 83 47.0
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 5.3e-11 75.9 119 36.1
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 3.8e-09 69.7 188 28.2
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.1e-08 68.2 90 43.3
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-07 64.7 165 32.1
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 2.1e-07 63.9 51 60.8
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 7.8e-07 62.0 83 45.8
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 1.3e-06 61.2 113 31.0
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 6.6e-06 58.9 83 44.6


User provided reference genes

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