Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 0.0e+00 1109.4 597 100.0
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 5.8e-192 674.9 609 68.1
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-189 667.2 620 64.8
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 1.3e-188 663.7 620 64.5
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 2.5e-187 659.4 620 64.4
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 4.3e-187 658.7 616 63.8
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 2.2e-183 646.4 621 62.8
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.2e-183 646.4 626 63.6
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.0e-180 637.5 678 58.0
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 9.1e-169 597.8 616 60.1
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.4e-156 557.4 654 55.7
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.5e-110 404.4 595 48.2
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 8.1e-109 398.7 656 43.9
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.0e-108 396.4 643 44.5
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 2.7e-104 383.6 650 45.8
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.7e-104 383.6 653 44.1
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 8.6e-103 378.6 609 45.8
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 8.6e-103 378.6 609 45.8
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.5e-102 377.9 621 45.4
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.9e-102 377.5 608 47.4
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.6e-102 375.9 655 42.7
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 2.6e-99 367.1 611 45.3
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.2e-92 342.8 720 39.3
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 7.3e-86 322.4 617 40.8
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 7.3e-86 322.4 699 38.6
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 6.9e-84 315.8 717 37.5
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 4.9e-82 309.7 703 38.7
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.6e-80 304.7 680 39.0
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 5.6e-78 296.2 689 36.7
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 2.5e-73 280.8 673 36.6
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 7.1e-65 252.7 535 39.3
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.5e-59 235.0 729 34.6
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 2.3e-47 194.5 747 30.9
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.0e-47 194.1 597 35.3
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 8.8e-47 192.6 687 30.6
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.5e-43 181.8 601 34.9
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 7.7e-43 179.5 761 28.9
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.7e-42 178.3 796 30.3
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 1.9e-41 174.9 597 32.7
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 7.2e-41 172.9 666 32.9
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-40 172.2 669 32.7
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 1.2e-40 172.2 669 32.7
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 3.6e-40 170.6 507 31.2
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 8.0e-40 169.5 645 32.1
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.3e-39 167.9 621 32.7
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-38 164.5 636 29.7
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 3.1e-36 157.5 398 37.9
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 5.3e-36 156.8 722 28.7
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 7.0e-36 156.4 659 32.6
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 7.0e-36 156.4 444 33.3
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.5e-35 154.1 345 37.7
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 3.8e-34 150.6 507 30.0
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 3.8e-34 150.6 625 31.0
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.1e-33 149.1 615 30.1
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 4.2e-33 147.1 363 36.4
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 5.5e-33 146.7 629 28.8
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.0e-31 142.5 599 32.2
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-31 141.4 527 30.2
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 2.6e-30 137.9 93 77.4
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 4.4e-30 137.1 93 77.4
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.4e-30 137.1 376 34.3
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 5.7e-30 136.7 372 35.2
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.5e-30 136.3 526 29.8
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 9.7e-30 136.0 361 32.4
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.7e-29 135.2 615 29.8
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 2.2e-29 134.8 489 29.4
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 3.7e-29 134.0 367 32.7
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 6.3e-29 133.3 632 30.4
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 8.3e-29 132.9 481 28.7
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 8.3e-29 132.9 254 38.2
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.1e-28 132.5 640 30.2
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 1.1e-28 132.5 376 35.6
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.4e-28 132.1 370 33.8
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.4e-28 131.3 371 31.8
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 3.1e-28 131.0 694 27.7
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.7e-27 127.9 580 28.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.7e-27 127.9 404 33.7
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.5e-27 127.5 786 26.0
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.0e-26 125.9 622 28.8
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.7e-26 125.2 426 31.0
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 2.2e-26 124.8 374 31.0
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.8e-26 124.0 423 31.2
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 6.5e-26 123.2 685 31.7
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 8.5e-26 122.9 465 29.7
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 5.5e-25 120.2 578 28.5
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.5e-25 120.2 643 28.1
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.2e-24 119.0 657 28.6
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 4.7e-24 117.1 265 36.2
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.0e-24 116.3 618 26.7
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.4e-23 115.5 447 31.1
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.3e-23 114.8 360 33.3
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 7.5e-22 109.8 661 28.6
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.5e-22 109.8 689 28.3
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 2.2e-21 108.2 240 37.1
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 4.8e-21 107.1 257 35.0
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 8.3e-21 106.3 454 26.2
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.4e-20 105.5 397 30.7
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.4e-20 103.6 376 30.9
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 9.1e-20 102.8 583 28.3
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.6e-19 102.1 392 27.3
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.6e-19 102.1 305 32.5
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.5e-19 100.9 394 27.9
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 3.5e-19 100.9 293 34.1
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 4.5e-19 100.5 261 36.8
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 7.7e-19 99.8 368 29.6
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.7e-18 98.6 117 55.6
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.9e-18 97.8 376 29.3
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 2.9e-18 97.8 597 27.1
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 3.8e-18 97.4 336 29.8
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.9e-17 95.1 255 36.1
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 9.5e-17 92.8 274 33.9
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.8e-16 91.3 204 35.3
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 8.0e-16 89.7 605 26.3
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 8.0e-16 89.7 292 32.2
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 8.0e-16 89.7 233 39.5
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 2.3e-15 88.2 426 27.0
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 6.8e-15 86.7 267 32.2
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.5e-14 85.5 394 26.6
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 2.6e-14 84.7 658 25.5
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 5.7e-14 83.6 581 26.5
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 7.5e-14 83.2 603 28.4
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 9.8e-14 82.8 766 23.4
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 1.3e-13 82.4 231 33.8
BcaB06g26292 Brassica carinata HOM05D023865 ORTHO05D019960 2.2e-13 81.6 179 36.9
BcaNung06066 Brassica carinata HOM05D023865 ORTHO05D019960 2.2e-13 81.6 179 36.9
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 3.7e-13 80.9 319 29.2
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 4.9e-13 80.5 386 25.9
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 4.9e-13 80.5 197 33.0
BolC3t14506H Brassica oleracea HOM05D026065 ORTHO05D019960 6.3e-13 80.1 193 39.9
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 6.3e-13 80.1 362 27.3
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.4e-12 79.0 222 34.7
BolC2t10446H Brassica oleracea HOM05D026065 ORTHO05D019960 1.8e-12 78.6 193 39.4
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 3.2e-12 77.8 338 28.4
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.2e-12 77.8 299 29.8
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.6e-11 75.5 303 29.7
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.0e-11 75.1 293 29.7
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.7e-11 74.7 262 31.3
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 5.9e-11 73.6 120 42.5
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.9e-11 73.6 246 32.1
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 5.9e-11 73.6 652 25.0
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 7.8e-11 73.2 186 34.9
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 1.0e-10 72.8 265 29.4
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 1.3e-10 72.4 474 30.2
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 2.9e-10 71.2 244 31.1
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 2.9e-10 71.2 579 26.4
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.9e-10 70.9 721 26.2
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 5.6e-09 67.0 583 25.4
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 7.3e-09 66.6 228 31.1
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 7.3e-09 66.6 253 29.6
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.2e-08 65.9 419 24.8
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.6e-08 65.5 113 38.9
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 2.8e-08 64.7 226 30.1
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 3.6e-08 64.3 208 30.3
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.0e-08 63.2 239 32.6
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 1.0e-07 62.8 172 33.7
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 1.4e-07 62.4 159 32.7
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 3.1e-07 61.2 400 25.0
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 4.0e-07 60.8 109 37.6
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 5.2e-07 60.5 170 29.4
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 6.8e-07 60.1 598 24.2
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 1.2e-06 59.3 183 31.7
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 1.5e-06 58.9 172 32.0
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 1.5e-06 58.9 172 32.0
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 1.5e-06 58.9 219 31.1
BcaB05g23591 Brassica carinata HOM05D023865 ORTHO05D019960 2.0e-06 58.5 122 37.7
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 3.4e-06 57.8 183 31.1
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 3.4e-06 57.8 311 26.7
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 4.4e-06 57.4 134 35.1
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 5.8e-06 57.0 425 27.1
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 7.5e-06 56.6 564 23.9
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 7.5e-06 56.6 222 30.6


User provided reference genes

Program Settings