Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g23020 Schrenkiella parvula HOM05D000113 ORTHO05D372359 2.0e-63 245.7 136 100.0
AL7G28140 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 9.4e-13 77.4 118 47.5
Ah.13g072960 Amaranthus hybridus HOM05D000113 ORTHO05D002571 3.9e-11 72.0 96 45.8
Thhalv10006650m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 6.7e-11 71.2 118 44.1
BcaB06g29390 Brassica carinata HOM05D000113 ORTHO05D002571 8.8e-11 70.9 118 43.2
AL1G46740 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 2.0e-10 69.7 117 43.6
BcaB03g13728 Brassica carinata HOM05D000113 ORTHO05D002571 2.0e-10 69.7 117 43.6
AT1G32490 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 3.3e-10 68.9 117 43.6
Sp1g28410 Schrenkiella parvula HOM05D000113 ORTHO05D002571 3.3e-10 68.9 117 43.6
Sp4g17550 Schrenkiella parvula HOM05D000113 ORTHO05D002571 3.3e-10 68.9 117 44.4
AT2G35340 Arabidopsis thaliana HOM05D000113 ORTHO05D002571 5.7e-10 68.2 117 44.4
Carub.0004s1703 Capsella rubella HOM05D000113 ORTHO05D002571 5.7e-10 68.2 117 43.6
AL4G31370 Arabidopsis lyrata HOM05D000113 ORTHO05D002571 9.7e-10 67.4 117 43.6
BcaC05g27851 Brassica carinata HOM05D000113 ORTHO05D002571 9.7e-10 67.4 117 42.7
A05p24800 Brassica napus HOM05D000113 ORTHO05D002571 9.7e-10 67.4 117 42.7
C05p38490 Brassica napus HOM05D000113 ORTHO05D002571 9.7e-10 67.4 117 42.7
BolC5t32583H Brassica oleracea HOM05D000113 ORTHO05D002571 9.7e-10 67.4 117 42.7
BraA05t21363Z Brassica rapa HOM05D000113 ORTHO05D002571 9.7e-10 67.4 117 42.7
Carub.0001s3090 Capsella rubella HOM05D000113 ORTHO05D002571 9.7e-10 67.4 117 43.6
CARHR031940 Cardamine hirsuta HOM05D000113 ORTHO05D002571 1.3e-09 67.0 117 41.9
Thhalv10017881m.g Eutrema salsugineum HOM05D000113 ORTHO05D002571 2.8e-09 65.9 117 42.7
Aa31LG2G13460 Aethionema arabicum HOM05D000113 ORTHO05D002571 6.3e-09 64.7 117 41.0
A04p33610 Brassica napus HOM05D000113 ORTHO05D002571 8.2e-09 64.3 117 41.0
THA.LOC104812747 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 1.4e-08 63.5 118 40.7
THA.LOC104812748 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 1.4e-08 63.5 118 40.7
Aa31LG7G3640 Aethionema arabicum HOM05D000113 ORTHO05D002571 3.1e-08 62.4 117 39.3
Aa31LG7G3730 Aethionema arabicum HOM05D000113 ORTHO05D002571 3.1e-08 62.4 117 39.3
Manes.13G073000 Manihot esculenta HOM05D000113 ORTHO05D002571 3.1e-08 62.4 117 39.3
Atru.chr12.1785 Acer truncatum HOM05D000113 ORTHO05D002571 5.3e-08 61.6 117 37.6
Aa31LG9G8960 Aethionema arabicum HOM05D000113 ORTHO05D002571 5.3e-08 61.6 48 64.6
Ciclev10019101m.g Citrus clementina HOM05D000113 ORTHO05D002571 5.3e-08 61.6 117 39.3
PGR044G1093 Punica granatum HOM05D000113 ORTHO05D002571 5.3e-08 61.6 117 38.5
Peaxi162Scf00006g00353 Petunia axillaris HOM05D000113 ORTHO05D002571 1.2e-07 60.5 117 37.6
SGA_v2.0_scaffold7G04034 Striga asiatica HOM05D000113 ORTHO05D002571 1.2e-07 60.5 117 38.5
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.5e-07 60.1 117 37.6
MELO3C017216.2 Cucumis melo HOM05D000113 ORTHO05D002571 1.5e-07 60.1 117 37.6
Migut.D01678 Erythranthe guttata HOM05D000113 ORTHO05D002571 1.5e-07 60.1 117 39.3
Potri.015G008700 Populus trichocarpa HOM05D000113 ORTHO05D002571 1.5e-07 60.1 117 38.5
Sed0009402 Sechium edule HOM05D000113 ORTHO05D002571 1.5e-07 60.1 117 37.6
Sed0024832 Sechium edule HOM05D000113 ORTHO05D002571 1.5e-07 60.1 117 36.8
Sopen09g005790 Solanum pennellii HOM05D000113 ORTHO05D002571 2.0e-07 59.7 117 38.5
EL10Ac3g06248 Beta vulgaris HOM05D000113 ORTHO05D002571 2.6e-07 59.3 119 38.7
CSS0035910 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 2.6e-07 59.3 100 40.0
Ah.13g073050 Amaranthus hybridus HOM05D000113 ORTHO05D002571 3.4e-07 58.9 119 37.0
AUR62002552 Chenopodium quinoa HOM05D000113 ORTHO05D002571 3.4e-07 58.9 119 37.8
CsaV3_1G002800 Cucumis sativus L. HOM05D000113 ORTHO05D002571 3.4e-07 58.9 117 36.8
Nitab4.5_0001410g0130 Nicotiana tabacum HOM05D000113 ORTHO05D002571 3.4e-07 58.9 117 38.5
Nitab4.5_0004284g0070 Nicotiana tabacum HOM05D000113 ORTHO05D002571 3.4e-07 58.9 117 38.5
Oeu008272.2 Olea europaea HOM05D000113 ORTHO05D002571 3.4e-07 58.9 117 37.6
Sc10g0009750 Simmondsia chinensis HOM05D000113 ORTHO05D002571 3.4e-07 58.9 120 35.8
Actinidia19007 Actinidia chinensis HOM05D000113 ORTHO05D002571 4.5e-07 58.5 117 38.5
Actinidia35027 Actinidia chinensis HOM05D000113 ORTHO05D002571 4.5e-07 58.5 117 38.5
Aa31LG7G6920 Aethionema arabicum HOM05D000113 ORTHO05D002571 4.5e-07 58.5 46 63.0
Cc04_g15020 Coffea canephora HOM05D000113 ORTHO05D002571 4.5e-07 58.5 117 37.6
Duzib205G1857 Durio zibethinus HOM05D000113 ORTHO05D002571 4.5e-07 58.5 118 36.4
Atru.chr11.2088 Acer truncatum HOM05D000113 ORTHO05D002571 5.9e-07 58.2 119 36.1
Medtr3g023880 Medicago truncatula HOM05D000113 ORTHO05D002571 5.9e-07 58.2 117 39.3
Psat0s3790g0080 Pisum sativum HOM05D000113 ORTHO05D002571 5.9e-07 58.2 117 38.5
HPP92_010045 Vanilla planifolia HOM05D000113 ORTHO05D002571 5.9e-07 58.2 117 37.6
GSVIVG01007911001 Vitis vinifera HOM05D000113 ORTHO05D002571 5.9e-07 58.2 117 37.6
CAN.G479.25 Capsicum annuum HOM05D000113 ORTHO05D002571 7.7e-07 57.8 117 37.6
Dinv38794 Davidia involucrata HOM05D000113 ORTHO05D002571 7.7e-07 57.8 117 36.8
Solyc09g011060.2 Solanum lycopersicum HOM05D000026 ORTHO05D000094 7.7e-07 57.8 117 37.6
Glyma.06G201700 Glycine max HOM05D000113 ORTHO05D002571 1.0e-06 57.4 117 37.6
Peaxi162Scf00201g00132 Petunia axillaris HOM05D000113 ORTHO05D002571 1.0e-06 57.4 117 37.6
TPR.G12156 Trifolium pratense HOM05D000113 ORTHO05D002571 1.0e-06 57.4 117 37.6
Aqoxy3G03585 Aquilegia oxysepala HOM05D000113 ORTHO05D002571 1.3e-06 57.0 117 38.5
Medtr5g075310 Medicago truncatula HOM05D000113 ORTHO05D002571 1.7e-06 56.6 46 63.0
Nitab4.5_0000219g0080 Nicotiana tabacum HOM05D000113 ORTHO05D002571 1.7e-06 56.6 117 36.8
THA.LOC104825443 Tarenaya hassleriana HOM05D000113 ORTHO05D002571 1.7e-06 56.6 46 63.0
Thecc.03G097900 Theobroma cacao HOM05D000113 ORTHO05D002571 1.7e-06 56.6 117 35.0
AUR62029966 Chenopodium quinoa HOM05D000113 ORTHO05D002571 2.2e-06 56.2 43 65.1
AUR62033485 Chenopodium quinoa HOM05D000113 ORTHO05D002571 2.2e-06 56.2 46 60.9
Eucgr.K02505 Eucalyptus grandis HOM05D000113 ORTHO05D002571 2.2e-06 56.2 117 35.0
QL10p018828 Quercus lobata HOM05D000113 ORTHO05D002571 2.2e-06 56.2 117 36.8
CSS0000469 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D002571 2.9e-06 55.8 117 36.8
Ciclev10017732m.g Citrus clementina HOM05D000113 ORTHO05D002571 2.9e-06 55.8 117 35.9
COL.COLO4_22215 Corchorus olitorius HOM05D000113 ORTHO05D002571 2.9e-06 55.8 117 36.8
Hma1.2p1_0060F.1_g033270 Hydrangea macrophylla HOM05D000113 ORTHO05D002571 2.9e-06 55.8 117 36.8
Rhsim12G0152100 Rhododendron simsii HOM05D000113 ORTHO05D002571 2.9e-06 55.8 117 36.8
Solyc03g115390.4 Solanum lycopersicum HOM05D000113 ORTHO05D002571 2.9e-06 55.8 117 36.8
Sopen03g034400 Solanum pennellii HOM05D000113 ORTHO05D002571 2.9e-06 55.8 117 36.8
PGSC0003DMG402024649 Solanum tuberosum HOM05D000113 ORTHO05D002571 2.9e-06 55.8 117 36.8
Lj6g0016007 Lotus japonicus HOM05D000113 ORTHO05D002571 3.8e-06 55.5 117 36.8
RhsimUnG0148700 Rhododendron simsii HOM05D000113 ORTHO05D002571 3.8e-06 55.5 117 36.8
arahy.Tifrunner.gnm1.ann1.LUB4JJ Arachis hypogaea HOM05D000113 ORTHO05D002571 5.0e-06 55.1 117 35.9
arahy.Tifrunner.gnm1.ann1.U2PNLV Arachis hypogaea HOM05D000113 ORTHO05D002571 5.0e-06 55.1 117 35.9
PSO063G4203 Papaver somniferum HOM05D000113 ORTHO05D002571 5.0e-06 55.1 117 36.8
PSO409G0035 Papaver somniferum HOM05D000113 ORTHO05D002571 5.0e-06 55.1 117 36.8
Prupe.5G201700 Prunus persica HOM05D000113 ORTHO05D002571 5.0e-06 55.1 117 36.8
Prupe.6G159800 Prunus persica HOM05D000113 ORTHO05D002571 5.0e-06 55.1 117 36.8
RcHm_v2.0_Chr2g0092491 Rosa chinensis HOM05D000113 ORTHO05D002571 5.0e-06 55.1 116 37.9
Sed0002514 Sechium edule HOM05D000113 ORTHO05D002571 5.0e-06 55.1 117 35.0
TPR.G39341 Trifolium pratense HOM05D000113 ORTHO05D002571 5.0e-06 55.1 117 36.8
Ca_13800_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 6.5e-06 54.7 117 36.8
Ca_26393_v3 Cicer arietinum L. HOM05D000113 ORTHO05D002571 6.5e-06 54.7 43 62.8
Phvul.009G193400 Phaseolus vulgaris HOM05D000113 ORTHO05D002571 6.5e-06 54.7 117 35.9
Gohir.A12G181200 Gossypium hirsutum HOM05D000113 ORTHO05D002571 8.5e-06 54.3 117 35.9
Gohir.D12G183900 Gossypium hirsutum HOM05D000113 ORTHO05D002571 8.5e-06 54.3 117 35.9
Gorai.008G197200 Gossypium raimondii HOM05D000113 ORTHO05D002571 8.5e-06 54.3 117 35.9
Lsat_1_v5_gn_6_69341 Lactuca sativa HOM05D000113 ORTHO05D002571 8.5e-06 54.3 117 36.8
MD06G1200100 Malus domestica HOM05D000113 ORTHO05D002571 8.5e-06 54.3 117 36.8
unitig_8.g2956 Utricularia gibba HOM05D000113 ORTHO05D002571 8.5e-06 54.3 43 62.8


User provided reference genes

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