Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 5.9e-261 903.7 453 100.0
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 3.4e-253 877.9 453 96.7
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 3.8e-252 874.4 453 96.9
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 2.1e-250 868.6 454 95.6
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 7.9e-250 866.7 453 94.9
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 5.7e-248 860.5 453 94.7
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 9.7e-248 859.8 453 94.5
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 1.7e-247 859.0 453 93.8
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 5.3e-246 854.0 478 90.6
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 3.4e-245 851.3 444 95.0
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 1.0e-241 839.7 453 92.3
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 9.1e-238 826.6 453 90.5
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 1.6e-226 789.3 453 84.8
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 3.6e-210 734.9 453 79.5
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 1.4e-209 733.0 455 79.6
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 6.8e-209 730.7 450 78.9
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 8.9e-209 730.3 450 79.3
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 2.6e-208 728.8 384 95.6
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 1.7e-207 726.1 450 78.7
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 2.9e-207 725.3 450 77.6
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 1.1e-206 723.4 450 78.4
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 1.1e-206 723.4 454 77.3
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 1.1e-206 723.4 454 77.3
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 1.8e-206 722.6 454 77.8
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 1.8e-206 722.6 450 78.7
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 2.4e-206 722.2 466 76.0
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 7.0e-206 720.7 453 76.8
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 5.9e-205 717.6 450 77.3
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 7.8e-205 717.2 450 76.9
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.7e-204 716.1 455 76.9
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 5.0e-204 714.5 454 76.9
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 6.6e-204 714.1 454 77.3
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 8.6e-204 713.8 451 76.7
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.9e-203 712.6 464 75.4
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 5.6e-203 711.1 450 75.8
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 3.6e-202 708.4 447 77.0
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 4.7e-202 708.0 450 75.6
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 5.2e-201 704.5 451 76.5
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 1.2e-200 703.4 451 77.2
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 2.6e-200 702.2 487 71.7
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 4.4e-200 701.4 451 75.8
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 2.2e-199 699.1 455 75.8
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 2.2e-199 699.1 450 74.4
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 3.7e-199 698.4 453 75.7
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 1.9e-198 696.0 450 73.6
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 7.0e-198 694.1 451 75.4
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.0e-197 692.6 450 74.4
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 2.0e-197 692.6 457 74.6
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 2.0e-197 692.6 450 74.2
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 2.0e-197 692.6 451 74.1
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.7e-197 692.2 459 74.7
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 7.8e-197 690.6 456 76.5
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 1.0e-196 690.3 450 73.3
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 2.3e-196 689.1 448 75.2
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 1.1e-195 686.8 450 72.9
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 1.9e-195 686.0 456 74.3
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 2.8e-194 682.2 450 73.3
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 3.6e-194 681.8 450 72.9
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 2.3e-193 679.1 455 73.0
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 4.0e-193 678.3 447 74.3
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 1.2e-192 676.8 454 73.6
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 5.8e-192 674.5 454 73.1
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 1.7e-191 672.9 484 70.0
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 2.7e-189 665.6 447 71.1
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 4.6e-189 664.8 453 72.6
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 7.8e-189 664.1 480 70.8
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 3.9e-188 661.8 447 70.0
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 1.8e-185 652.9 468 66.9
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 8.9e-185 650.6 491 68.0
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 1.5e-184 649.8 473 69.8
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 3.8e-183 645.2 461 70.1
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 1.1e-182 643.7 414 75.8
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.6e-181 639.8 450 68.2
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 1.3e-180 636.7 440 72.5
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 3.0e-180 635.6 480 66.7
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 5.1e-180 634.8 450 69.8
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 2.1e-178 629.4 457 72.0
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 1.1e-177 627.1 467 67.5
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 1.2e-176 623.6 447 70.2
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 3.8e-175 618.6 407 73.5
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 3.8e-175 618.6 460 68.9
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 3.0e-172 609.0 450 68.7
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 8.7e-172 607.4 554 59.4
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 4.5e-168 595.1 397 72.3
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 8.4e-167 590.9 492 61.2
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 1.4e-166 590.1 451 66.5
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 9.3e-166 587.4 450 65.6
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 2.7e-165 585.9 513 60.0
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 7.9e-165 584.3 403 71.0
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 4.5e-160 568.5 515 58.8
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 2.9e-159 565.8 355 79.4
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.6e-154 550.1 484 59.5
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.6e-154 550.1 495 59.2
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 8.2e-154 547.7 447 63.3
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.6e-149 533.5 340 75.6
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 6.0e-149 531.6 325 80.3
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.5e-147 526.9 432 60.4
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 6.9e-137 491.5 456 51.5
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 3.0e-132 476.1 415 59.5
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 3.7e-130 469.2 301 78.1
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 1.8e-129 466.8 456 48.9
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 1.8e-124 450.3 296 75.0
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 2.2e-122 443.4 505 48.7
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 8.5e-119 431.4 458 47.6
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.8e-114 416.4 348 62.1
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 1.0e-108 397.9 444 45.7
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 6.8e-108 395.2 268 73.9
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 2.0e-104 383.6 446 43.9
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 5.7e-99 365.5 433 49.0
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 5.0e-95 352.4 275 63.6
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.1e-94 351.3 230 74.8
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 2.2e-90 337.0 205 81.0
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 3.7e-74 283.1 254 57.5
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 3.3e-70 270.0 237 59.5
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.1e-65 255.0 186 70.4
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 3.0e-63 246.9 283 47.7
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 1.9e-62 244.2 173 65.9
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 3.3e-62 243.4 224 50.4
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.8e-60 237.7 461 31.7
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 7.6e-59 232.3 325 45.8
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 1.1e-57 228.4 148 73.6
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 1.6e-56 224.6 515 29.7
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.3e-55 221.5 459 31.2
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.9e-49 201.1 545 27.3
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 4.3e-46 189.9 129 69.0
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 1.2e-35 155.2 96 69.8
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 8.4e-34 149.1 110 60.9
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 8.4e-34 149.1 110 60.9
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.6e-32 144.8 113 64.6
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 3.3e-30 137.1 111 64.9
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 7.7e-27 125.9 97 56.7
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.1e-25 122.1 70 84.3
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 9.4e-25 119.0 69 82.6
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 4.6e-24 116.7 69 81.2
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.1e-20 102.4 81 59.3
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 4.5e-19 100.1 58 74.1
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 7.2e-17 92.8 183 35.5
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 9.4e-17 92.4 64 67.2
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 6.1e-16 89.7 83 51.8
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 2.0e-14 84.7 52 76.9
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 3.3e-14 84.0 51 78.4
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 5.3e-12 76.6 57 61.4
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.2e-11 75.5 58 56.9
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 2.3e-07 61.2 69 50.7
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 3.0e-07 60.8 101 38.6
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.1e-06 58.9 36 80.6
Gohir.D10G060133 Gossypium hirsutum HOM05D005098 ORTHO05D006646 7.4e-06 56.2 35 77.1
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 9.7e-06 55.8 38 68.4


User provided reference genes

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