Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 100.0
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 100.0
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 100.0
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 100.0
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 100.0
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 100.0
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 100.0
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 100.0
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 100.0
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 7.7e-24 112.8 52 100.0
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 3.8e-23 110.5 52 98.1
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.5e-22 108.6 52 92.3
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 1.9e-22 108.2 52 96.2
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 92.3
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 92.3
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 96.2
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 92.3
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 92.3
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 92.3
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 92.3
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 92.3
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 2.5e-22 107.8 52 92.3
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 5.5e-22 106.7 52 90.4
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 90.4
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 90.4
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 90.4
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 90.4
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 90.4
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 90.4
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 90.4
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 7.2e-22 106.3 52 90.4
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 9.4e-22 105.9 52 90.4
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.2e-21 105.5 52 88.5
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 1.6e-21 105.1 52 90.4
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 1.6e-21 105.1 52 90.4
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 2.1e-21 104.8 49 98.0
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 92.3
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 92.3
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 88.5
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 88.5
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 88.5
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 2.1e-21 104.8 52 90.4
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 2.7e-21 104.4 52 88.5
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 3.6e-21 104.0 53 94.3
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 88.5
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 4.7e-21 103.6 50 92.0
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 6.1e-21 103.2 52 86.5
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 6.1e-21 103.2 52 86.5
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 6.1e-21 103.2 52 88.5
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 1.4e-20 102.1 53 88.7
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 86.5
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 1.4e-20 102.1 53 88.7
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 2.3e-20 101.3 52 84.6
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 2.3e-20 101.3 50 90.0
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 3.0e-20 100.9 52 86.5
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 5.2e-20 100.1 52 84.6
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 6.7e-20 99.8 48 93.8
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 6.7e-20 99.8 48 93.8
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 6.7e-20 99.8 48 93.8
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 6.7e-20 99.8 51 86.3
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 6.7e-20 99.8 52 84.6
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 8.8e-20 99.4 44 100.0
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 1.2e-19 99.0 52 84.6
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 1.2e-19 99.0 48 89.6
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 1.2e-19 99.0 53 84.9
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 1.2e-19 99.0 53 84.9
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.6e-19 97.8 47 89.4
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 3.3e-19 97.4 52 82.7
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 4.4e-19 97.1 52 84.6
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 5.7e-19 96.7 48 87.5
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 5.7e-19 96.7 52 80.8
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 5.7e-19 96.7 48 87.5
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 7.5e-19 96.3 45 95.6
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 7.5e-19 96.3 46 91.3
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 1.3e-18 95.5 45 91.1
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 1.7e-18 95.1 44 95.5
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 1.7e-18 95.1 47 87.2
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 3.7e-18 94.0 46 89.1
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 3.7e-18 94.0 42 97.6
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 3.7e-18 94.0 47 87.2
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 4.8e-18 93.6 67 73.1
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 4.8e-18 93.6 44 90.9
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 6.3e-18 93.2 44 90.9
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 6.3e-18 93.2 46 87.0
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 6.3e-18 93.2 44 90.9
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 6.3e-18 93.2 44 90.9
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 6.3e-18 93.2 46 87.0
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 6.3e-18 93.2 46 87.0
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 6.3e-18 93.2 46 87.0
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 6.3e-18 93.2 44 90.9
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 6.3e-18 93.2 44 90.9
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 8.2e-18 92.8 44 90.9
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 1.8e-17 91.7 46 84.8
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 1.8e-17 91.7 44 88.6
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 1.8e-17 91.7 46 84.8
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.4e-17 91.3 44 90.9
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 2.4e-17 91.3 44 88.6
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.1e-17 90.9 51 78.4
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 3.1e-17 90.9 44 88.6
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 4.1e-17 90.5 48 87.5
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 4.1e-17 90.5 49 81.6
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 5.3e-17 90.1 52 69.2
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 5.3e-17 90.1 52 69.2
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 5.3e-17 90.1 54 79.6
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 5.3e-17 90.1 46 87.0
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 5.3e-17 90.1 48 85.4
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.2e-16 89.0 45 88.9
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 1.6e-16 88.6 48 83.3
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 1.6e-16 88.6 48 83.3
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 1.6e-16 88.6 51 82.4
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.0e-16 88.2 44 86.4
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.0e-16 88.2 44 86.4
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 4.5e-16 87.0 48 79.2
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 7.7e-16 86.3 45 82.2
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.0e-15 85.9 40 90.0
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 84.1
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 1.7e-15 85.1 84 57.1
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.2e-15 84.7 44 81.8
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 5.0e-15 83.6 44 81.8
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 8.5e-15 82.8 43 81.4
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 1.5e-14 82.0 44 81.8
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 4.2e-14 80.5 43 79.1
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 5.5e-14 80.1 66 60.6
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 7.2e-14 79.7 48 66.7
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 7.2e-14 79.7 43 79.1
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 1.2e-13 79.0 45 75.6
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.6e-13 78.6 50 72.0
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.1e-13 78.2 47 76.6
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.1e-13 78.2 47 76.6
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 2.1e-13 78.2 52 65.4
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 3.6e-13 77.4 45 77.8
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 1.0e-12 75.9 42 76.2
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 5.2e-12 73.6 32 96.9
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 2.0e-11 71.6 41 78.0
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.6e-11 71.2 39 74.4
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 2.6e-11 71.2 54 59.3
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 5.7e-11 70.1 83 48.2
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 9.8e-11 69.3 35 85.7
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 2.2e-10 68.2 42 69.0
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 4.8e-10 67.0 34 85.3
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 1.1e-09 65.9 31 93.5
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 1.1e-09 65.9 31 93.5
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 7.0e-09 63.2 58 50.0
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 7.0e-09 63.2 50 52.0
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.0e-09 63.2 50 52.0
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.0e-09 63.2 50 52.0
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 1.2e-08 62.4 50 52.0
arahy.Tifrunner.gnm1.ann1.VGS9ID Arachis hypogaea HOM05D004494 ORTHO05D005493 4.2e-06 53.9 37 59.5
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 4.2e-06 53.9 42 52.4


User provided reference genes

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