Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 8.4e-294 1013.4 723 100.0
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 1.2e-151 541.2 736 57.2
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 1.2e-151 541.2 736 57.2
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 1.6e-148 530.8 736 56.7
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 1.7e-132 477.6 720 52.2
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 4.1e-131 473.0 734 52.9
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.5e-120 438.0 886 53.3
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 5.0e-105 386.3 760 42.1
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.2e-98 365.2 777 39.5
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.1e-95 354.4 772 38.7
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 4.1e-91 340.1 724 40.5
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 4.1e-91 340.1 724 40.5
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.5e-88 331.6 787 39.4
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.4e-86 325.1 763 45.2
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 2.0e-85 321.2 763 44.4
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 2.0e-85 321.2 708 44.5
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.8e-85 319.7 738 37.5
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 7.5e-85 319.3 733 39.0
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 6.4e-84 316.2 746 40.9
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.9e-83 314.7 794 44.0
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 2.4e-83 314.3 804 40.4
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 6.0e-82 309.7 764 44.2
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 6.6e-81 306.2 753 37.1
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 4.7e-79 300.1 721 40.6
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-78 298.5 772 43.7
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.8e-71 274.2 794 39.7
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.1e-70 272.3 741 36.7
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.8e-68 263.8 759 40.2
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.5e-61 241.9 793 48.3
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.9e-51 208.4 754 47.5
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.4e-46 191.4 753 30.5
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 9.0e-46 189.5 738 30.2
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 3.4e-45 187.6 737 29.9
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.8e-45 186.8 761 28.9
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.9e-44 183.7 745 30.1
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.6e-42 178.7 743 31.2
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 1.0e-41 176.0 726 29.6
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 8.7e-41 172.9 735 29.7
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.7e-39 167.5 730 33.7
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.2e-37 162.5 755 29.0
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.5e-37 162.2 746 29.1
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.1e-34 151.8 742 27.9
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.1e-26 125.2 113 62.8
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.8e-22 112.1 248 42.3
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.1e-19 102.8 654 26.8
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.7e-15 89.0 157 49.0
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 3.7e-15 87.8 355 28.7
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 2.4e-14 85.1 300 29.3
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 2.4e-14 85.1 297 30.0
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.1e-14 84.7 284 31.3
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 4.1e-14 84.3 292 32.2
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 2.6e-13 81.6 305 30.2
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.5e-13 81.3 305 30.2
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.7e-12 79.0 304 28.9
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.9e-12 78.2 310 29.4
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 6.5e-12 77.0 266 29.3
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 6.5e-12 77.0 189 34.4
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 6.5e-12 77.0 299 30.1
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.4e-11 75.9 312 27.6
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.9e-11 75.5 314 29.3
BcaB05g21948 Brassica carinata HOM05D000139 ORTHO05D000103 3.2e-11 74.7 80 62.5
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 4.2e-11 74.3 266 28.9
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 7.2e-11 73.6 151 35.8
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 9.4e-11 73.2 151 35.8
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.6e-10 71.2 204 32.8
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 4.7e-10 70.9 246 27.2
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 6.1e-10 70.5 293 29.4
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-09 68.6 204 32.4
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 2.3e-09 68.6 243 30.5
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 2.3e-09 68.6 291 29.2
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 3.0e-09 68.2 299 25.4
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.0e-09 68.2 252 28.2
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 6.7e-09 67.0 316 28.2
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 8.8e-09 66.6 289 27.7
BolC1t02156H Brassica oleracea HOM05D004189 ORTHO05D031907 1.1e-08 66.2 81 49.4
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.1e-08 66.2 225 29.8
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.5e-08 65.9 115 46.1
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-08 65.9 232 28.4
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.5e-08 65.9 264 28.8
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 3.3e-08 64.7 185 34.6
BcaC09g50698 Brassica carinata HOM05D004189 ORTHO05D031907 4.4e-08 64.3 81 48.1
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 5.7e-08 63.9 182 34.1
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 5.7e-08 63.9 263 26.6
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 9.7e-08 63.2 254 29.1
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.3e-07 62.8 276 30.4
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.7e-07 62.4 287 30.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 2.8e-07 61.6 205 29.8
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 2.8e-07 61.6 277 28.2
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 4.8e-07 60.8 265 27.5
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 4.8e-07 60.8 329 27.7
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 8.2e-07 60.1 311 27.7
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.1e-06 59.7 205 28.8
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.4e-06 59.3 213 27.7
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 1.4e-06 59.3 167 31.1
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.4e-06 59.3 267 26.6
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 1.8e-06 58.9 54 59.3
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.8e-06 58.9 169 33.1
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 2.4e-06 58.5 79 43.0
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.4e-06 58.5 205 28.8
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 2.4e-06 58.5 275 29.5
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 3.1e-06 58.2 316 25.6
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 3.1e-06 58.2 293 27.6
C01p22260 Brassica napus HOM05D004189 ORTHO05D031907 4.1e-06 57.8 77 46.8
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 4.1e-06 57.8 148 34.5
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 4.1e-06 57.8 248 29.0
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 5.3e-06 57.4 54 57.4
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 5.3e-06 57.4 54 57.4
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 5.3e-06 57.4 255 27.1
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 7.0e-06 57.0 202 30.2
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 9.1e-06 56.6 262 26.7
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 9.1e-06 56.6 54 57.4


User provided reference genes

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