Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 2.0e-145 519.6 383 100.0
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 5.0e-128 461.8 382 89.5
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 5.5e-127 458.4 382 89.0
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.2e-126 457.2 382 89.0
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.2e-126 457.2 382 89.0
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 3.5e-121 439.1 388 89.9
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 6.1e-118 428.3 366 87.4
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 5.7e-116 421.8 386 86.8
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 1.6e-113 413.7 370 87.3
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 2.1e-110 403.3 390 86.2
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 8.0e-110 401.4 370 85.4
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 9.8e-108 394.4 392 81.4
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 1.8e-106 390.2 382 81.2
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 3.2e-103 379.4 390 77.9
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 4.7e-102 375.6 386 68.9
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 4.0e-101 372.5 404 65.6
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.2e-94 350.9 391 75.7
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 1.2e-94 350.9 379 77.6
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 2.0e-92 343.6 392 77.3
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 4.3e-87 325.9 390 72.8
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 2.8e-86 323.2 361 74.8
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 3.2e-82 309.7 362 58.6
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 3.5e-81 306.2 360 58.1
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 1.3e-80 304.3 374 69.3
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.3e-80 304.3 360 73.1
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 2.3e-80 303.5 360 73.1
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 5.0e-80 302.4 360 73.1
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.5e-79 300.8 359 70.5
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 1.9e-79 300.4 360 72.5
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 3.3e-79 299.7 360 71.7
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 4.3e-79 299.3 361 71.5
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 4.7e-78 295.8 388 69.1
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 6.2e-78 295.4 381 67.5
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 8.1e-78 295.0 361 72.6
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 3.1e-77 293.1 387 67.4
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 6.8e-77 292.0 362 69.9
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 6.8e-77 292.0 369 67.2
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 6.8e-77 292.0 380 67.9
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 1.2e-76 291.2 365 70.1
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.0e-76 290.4 383 67.6
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 2.0e-76 290.4 378 60.3
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 4.4e-76 289.3 391 68.8
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 4.4e-76 289.3 368 66.8
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 7.5e-76 288.5 376 70.5
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 9.8e-76 288.1 373 66.2
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 3.7e-75 286.2 359 70.5
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 6.4e-75 285.4 363 67.2
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 8.3e-75 285.0 363 66.9
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 1.1e-74 284.6 345 67.2
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 1.4e-74 284.3 361 72.9
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.9e-74 283.9 383 67.6
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 3.2e-74 283.1 374 63.1
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 4.1e-74 282.7 367 67.6
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 5.4e-74 282.3 362 69.3
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 7.1e-74 282.0 375 69.1
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.2e-73 281.2 367 69.2
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.7e-73 280.0 361 67.3
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 2.7e-73 280.0 361 67.3
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.7e-73 280.0 386 63.7
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 2.3e-72 276.9 367 67.8
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 2.3e-72 276.9 370 65.9
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 2.3e-72 276.9 387 63.8
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 6.6e-72 275.4 358 67.3
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 2.5e-71 273.5 361 57.3
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 3.3e-71 273.1 389 53.7
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 3.3e-71 273.1 373 66.2
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 5.6e-71 272.3 343 66.2
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 5.6e-71 272.3 387 64.3
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 7.3e-71 271.9 356 68.0
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 7.3e-71 271.9 364 70.6
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 2.8e-70 270.0 360 67.2
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 2.8e-70 270.0 387 63.0
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 2.8e-70 270.0 375 62.1
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 8.1e-70 268.5 377 59.7
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.1e-69 268.1 386 63.5
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 1.8e-69 267.3 379 64.9
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 3.1e-69 266.5 377 65.3
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 2.6e-68 263.5 350 64.9
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 7.6e-68 261.9 355 63.4
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 2.9e-67 260.0 377 67.4
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 3.7e-67 259.6 358 62.8
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 8.4e-67 258.5 368 67.1
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 7.1e-66 255.4 357 64.7
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 4.6e-65 252.7 377 59.9
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 6.0e-65 252.3 342 66.4
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 3.9e-64 249.6 372 63.4
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.5e-63 247.7 368 63.3
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 5.6e-63 245.7 345 69.6
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 7.3e-63 245.4 338 69.2
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 7.3e-63 245.4 338 69.2
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 1.2e-60 238.0 357 63.0
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 2.9e-59 233.4 504 35.7
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 1.1e-58 231.5 357 62.2
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 1.9e-58 230.7 347 63.4
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 2.4e-58 230.3 370 60.8
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 2.7e-57 226.9 373 60.3
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 3.0e-56 223.4 268 73.5
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 4.3e-55 219.5 321 58.6
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.3e-54 218.0 338 62.7
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 4.8e-54 216.1 338 62.7
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 3.1e-53 213.4 373 61.7
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 2.0e-52 210.7 358 39.4
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 7.6e-52 208.8 395 55.4
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 2.2e-51 207.2 270 65.9
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 2.8e-46 190.3 308 61.7
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 2.0e-44 184.1 293 66.6
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 2.4e-42 177.2 332 57.8
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 9.3e-42 175.3 274 66.8
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 1.3e-40 171.4 305 63.6
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 1.8e-40 171.0 191 58.6
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.1e-38 164.1 318 59.7
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 3.7e-38 163.3 326 57.1
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.2e-36 158.3 135 78.5
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 5.8e-36 156.0 172 48.3
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 4.9e-35 152.9 387 51.9
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 3.2e-34 150.2 366 52.5
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 4.2e-34 149.8 309 56.3
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 7.1e-34 149.1 268 61.6
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.2e-33 148.3 384 49.5
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-33 147.9 127 71.7
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 2.1e-33 147.5 135 68.1
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 2.7e-33 147.1 156 55.1
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 7.9e-33 145.6 177 49.2
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 6.7e-32 142.5 304 56.9
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 5.5e-26 122.9 335 51.9
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.1e-23 115.2 127 60.6
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 1.9e-23 114.4 243 60.5
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 4.8e-22 109.8 254 56.7
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 6.3e-22 109.4 115 60.9
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 2.9e-19 100.5 92 56.5
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 7.9e-17 92.4 226 54.9
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 3.0e-16 90.5 376 44.4
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 2.8e-14 84.0 158 33.5
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 8.5e-11 72.4 58 81.0
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 1.4e-10 71.6 56 83.9
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 7.2e-10 69.3 56 82.1
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 9.7e-07 58.9 84 60.7


User provided reference genes

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