Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 0.0e+00 1755.7 900 100.0
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 0.0e+00 1390.2 896 81.1
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 0.0e+00 1338.9 895 77.1
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 0.0e+00 1312.4 888 76.7
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 0.0e+00 1305.0 900 75.3
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 0.0e+00 1280.0 902 74.7
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 0.0e+00 1276.5 901 74.6
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 0.0e+00 1274.6 901 74.5
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 0.0e+00 1270.0 903 74.2
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 0.0e+00 1261.1 897 73.9
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 0.0e+00 1257.7 924 72.5
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 0.0e+00 1102.8 906 66.8
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 9.2e-282 973.8 896 61.6
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 6.6e-256 887.9 744 64.9
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 5.2e-253 878.2 765 63.5
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 3.4e-244 849.0 771 62.1
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 3.6e-238 828.9 771 61.5
CARHR251520 Cardamine hirsuta HOM05D003625 ORTHO05D004382 2.8e-222 776.2 557 70.2
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 5.0e-211 738.8 952 46.8
BolC2t10009H Brassica oleracea HOM05D003625 ORTHO05D004382 3.8e-203 712.6 561 67.4
BcaB05g23686 Brassica carinata HOM05D003625 ORTHO05D004382 6.5e-203 711.8 703 58.2
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 6.1e-201 705.3 932 46.5
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 2.3e-200 703.4 925 47.2
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 1.4e-197 694.1 930 46.3
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 2.4e-197 693.3 926 47.0
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 1.5e-196 690.6 937 46.2
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 2.5e-194 683.3 930 45.5
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 4.2e-194 682.6 930 45.8
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 3.6e-193 679.5 948 45.3
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 1.8e-192 677.2 925 45.0
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 2.0e-191 673.7 953 44.8
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 1.3e-190 671.0 947 44.9
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 3.1e-189 666.4 939 43.8
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 1.2e-188 664.5 954 44.1
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 1.2e-188 664.5 928 44.5
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 6.5e-187 658.7 952 45.5
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 1.9e-186 657.1 929 44.7
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.9e-186 657.1 954 44.5
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 8.0e-185 651.7 946 44.2
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 1.4e-184 651.0 937 44.8
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 8.8e-184 648.3 1021 42.5
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 5.7e-183 645.6 922 43.6
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 7.0e-181 638.6 822 48.3
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 1.1e-178 631.3 958 42.6
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 2.5e-178 630.2 996 40.8
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 9.4e-178 628.2 997 40.7
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.6e-177 627.5 961 43.5
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 4.7e-177 625.9 942 42.1
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 5.2e-176 622.5 1003 40.5
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 6.8e-176 622.1 1002 40.4
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 1.2e-175 621.3 957 43.1
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 9.8e-175 618.2 934 42.1
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 3.7e-174 616.3 934 42.3
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 6.3e-174 615.5 933 43.1
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 1.4e-173 614.4 947 42.7
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 2.0e-172 610.5 911 42.3
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 3.5e-172 609.8 928 41.6
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 3.5e-172 609.8 840 46.4
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 7.7e-172 608.6 1026 39.6
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 3.8e-171 606.3 939 40.9
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 3.2e-170 603.2 961 40.8
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 4.2e-170 602.8 959 40.9
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 4.2e-170 602.8 962 40.6
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 1.0e-168 598.2 950 40.5
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 3.0e-168 596.7 995 40.0
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 6.8e-168 595.5 823 45.7
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-167 594.7 924 42.2
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 2.4e-165 587.0 897 42.3
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 3.8e-163 579.7 876 43.9
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 4.3e-162 576.2 918 41.5
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 1.6e-161 574.3 865 43.8
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.0e-160 571.6 919 41.7
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 1.4e-160 571.2 910 41.6
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 1.4e-160 571.2 930 41.6
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 3.0e-160 570.1 930 41.6
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 8.9e-160 568.5 933 39.5
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 4.9e-158 562.8 925 41.3
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.4e-157 560.5 939 39.7
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 1.2e-156 558.1 801 43.9
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 1.2e-156 558.1 929 39.0
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 5.9e-156 555.8 961 37.8
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 7.8e-156 555.4 905 40.0
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 3.0e-155 553.5 959 39.0
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 5.0e-155 552.7 898 40.8
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 6.2e-153 545.8 930 40.0
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 3.1e-152 543.5 963 39.3
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 2.0e-151 540.8 953 38.1
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 4.4e-151 539.7 915 39.2
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 9.8e-151 538.5 750 44.3
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 7.0e-149 532.3 994 38.5
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 6.6e-147 525.8 926 39.0
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 3.3e-146 523.5 966 36.9
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 1.2e-145 521.5 1091 35.7
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 6.4e-142 509.2 913 39.0
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 4.1e-141 506.5 786 43.4
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 4.1e-141 506.5 992 36.8
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 3.9e-139 500.0 893 38.6
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 6.2e-137 492.7 1006 36.8
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 2.6e-135 487.3 890 38.7
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 3.4e-135 486.9 926 38.0
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 5.8e-135 486.1 927 37.5
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.9e-134 483.8 902 37.0
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 4.9e-134 483.0 1022 35.3
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 5.4e-133 479.6 1026 34.4
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 7.1e-133 479.2 886 37.1
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 5.1e-131 473.0 327 76.8
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 1.1e-130 471.9 795 39.9
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 1.2e-129 468.4 1048 33.3
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 4.0e-128 463.4 932 35.2
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 3.4e-127 460.3 974 35.8
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.6e-124 451.4 944 35.1
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 3.6e-121 440.3 992 35.6
ClCG03G001700 Citrullus lanatus HOM05D003625 ORTHO05D004382 1.8e-120 438.0 587 44.3
Haze_24021 Corylus avellana HOM05D003625 ORTHO05D004382 2.9e-118 430.6 557 46.9
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 8.4e-118 429.1 779 39.0
arahy.Tifrunner.gnm1.ann1.TJRY6P Arachis hypogaea HOM05D003625 ORTHO05D004382 3.2e-117 427.2 549 44.8
arahy.Tifrunner.gnm1.ann1.L6Y1E3 Arachis hypogaea HOM05D003625 ORTHO05D004382 2.3e-115 421.0 577 43.3
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.1e-114 418.7 907 35.5
AUR62034599 Chenopodium quinoa HOM05D003625 ORTHO05D004382 2.2e-110 404.4 685 37.2
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 8.7e-107 392.5 1025 32.6
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 2.5e-106 391.0 750 35.5
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 7.4e-106 389.4 748 34.8
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 1.1e-104 385.6 835 36.3
HPP92_011331 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.0e-94 352.4 530 40.0
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.4e-91 342.0 593 39.5
Psat5g051000 Pisum sativum HOM05D003625 ORTHO05D004382 3.0e-91 340.9 467 42.8
Atru.chr5.1297 Acer truncatum HOM05D003625 ORTHO05D004382 2.8e-89 334.3 363 51.8
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.5e-87 328.6 1013 29.2
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 6.1e-84 316.6 1002 28.5
FvH4_2g24530 Fragaria vesca HOM05D003625 ORTHO05D004382 2.6e-79 301.2 339 50.7
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 8.2e-73 279.6 1025 28.0
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 5.3e-72 276.9 1082 27.4
TPR.G34306 Trifolium pratense HOM05D003625 ORTHO05D004382 1.5e-69 268.9 324 47.5
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 3.2e-69 267.7 515 37.3
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 6.1e-60 236.9 588 33.3
CSS0019256 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.0e-55 221.9 244 50.4
TPR.G40473 Trifolium pratense HOM05D003625 ORTHO05D004382 2.1e-52 211.8 256 45.7
SEGI_20946 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.0e-51 209.5 690 28.8
Sc17g0003670 Simmondsia chinensis HOM05D003625 ORTHO05D004382 3.0e-51 208.0 291 40.2
Sc17g0003660 Simmondsia chinensis HOM05D003625 ORTHO05D004382 2.3e-46 191.8 238 42.9
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 2.3e-43 181.8 345 39.1
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 2.6e-42 178.3 344 39.0
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 2.9e-41 174.9 344 38.7
HanXRQChr12g0370811 Helianthus annuus HOM05D003625 ORTHO05D004382 1.5e-37 162.5 352 34.1
AUR62034492 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.1e-35 156.4 184 48.4
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 1.9e-32 145.6 346 35.0
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 2.4e-32 145.2 437 32.0
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 6.0e-31 140.6 305 35.4
Hma1.2p1_0358F.1_g134790 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.9e-30 137.9 229 39.3
CSS0039297 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 4.4e-26 124.4 219 39.3
Hma1.2p1_0111F.1_g053430 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 2.2e-25 122.1 191 38.2
SEGI_15323 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 1.6e-23 115.9 166 43.4
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.7e-23 115.2 161 47.8
HanXRQChr12g0370771 Helianthus annuus HOM05D003625 ORTHO05D004382 5.2e-19 100.9 165 38.8
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.0e-18 99.0 170 41.8
QL01p033556 Quercus lobata HOM05D003625 ORTHO05D004382 1.7e-17 95.9 117 49.6
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 4.9e-17 94.4 255 29.8
QL05p076995 Quercus lobata HOM05D003625 ORTHO05D004382 4.9e-17 94.4 100 53.0
QL12p023490 Quercus lobata HOM05D003625 ORTHO05D004382 1.1e-16 93.2 229 34.5
CBR_g32447 Chara braunii HOM05D003625 ORTHO05D004382 1.9e-16 92.4 157 35.0
QL12p023546 Quercus lobata HOM05D003625 ORTHO05D004382 7.1e-16 90.5 163 42.3
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 1.6e-15 89.4 157 37.6
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 4.6e-15 87.8 144 43.8
CBR_g32446 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-12 79.0 134 35.1
Medtr4g061370 Medicago truncatula HOM05D000876 ORTHO05D000285 6.9e-11 73.9 145 31.7
QL05p076992 Quercus lobata HOM05D003625 ORTHO05D004382 9.0e-11 73.6 76 55.3
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 5.8e-10 70.9 74 47.3
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 1.7e-09 69.3 73 46.6
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 6.4e-09 67.4 198 30.8
SEGI_02434 Sequoiadendron giganteum HOM05D003625 ORTHO05D004382 8.4e-09 67.0 77 44.2
Os05g0188600 Oryza sativa ssp. japonica HOM05D003625 ORTHO05D004382 1.1e-08 66.6 94 33.0
Hma1.2p1_3245F.1_g334350 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 3.2e-08 65.1 116 37.9
TPR.G8723 Trifolium pratense HOM05D000036 ORTHO05D012241 3.2e-08 65.1 78 46.2
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 4.2e-08 64.7 174 30.5
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 1.2e-07 63.2 150 30.0
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 8.7e-06 57.0 142 31.7


User provided reference genes

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