Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g31170 Schrenkiella parvula HOM05D007020 ORTHO05D008935 1.8e-34 148.7 73 100.0
Thhalv10018588m.g Eutrema salsugineum HOM05D007020 ORTHO05D008935 3.4e-33 144.4 73 94.5
BcaC08g47303 Brassica carinata HOM05D007020 ORTHO05D008935 1.4e-31 139.0 73 90.4
A07p41540 Brassica napus HOM05D007020 ORTHO05D008935 1.8e-31 138.7 71 90.1
C06p49960 Brassica napus HOM05D007020 ORTHO05D008935 1.8e-31 138.7 71 91.5
BolC6t40035H Brassica oleracea HOM05D007020 ORTHO05D008935 1.8e-31 138.7 71 91.5
BcaC08g47097 Brassica carinata HOM05D007020 ORTHO05D008935 2.4e-31 138.3 71 90.1
AL2G36070 Arabidopsis lyrata HOM05D007020 ORTHO05D008935 4.1e-31 137.5 73 87.7
BraA07t31686Z Brassica rapa HOM05D007020 ORTHO05D008935 4.1e-31 137.5 71 90.1
CARHR069580 Cardamine hirsuta HOM05D007020 ORTHO05D008935 7.0e-31 136.7 71 85.9
AT1G76050 Arabidopsis thaliana HOM05D007020 ORTHO05D008935 1.7e-29 132.1 67 89.6
Carub.0002s2293 Capsella rubella HOM05D007020 ORTHO05D008935 5.0e-29 130.6 73 80.8
THA.LOC104809629 Tarenaya hassleriana HOM05D007020 ORTHO05D008935 2.6e-25 118.2 71 74.6
Aa31LG4G6160 Aethionema arabicum HOM05D000059 ORTHO05D000128 3.4e-25 117.9 71 80.3
Sed0026116 Sechium edule HOM05D007020 ORTHO05D008935 2.6e-17 91.7 71 57.7
Hund05155 Selenicereus undatus HOM05D007020 ORTHO05D008935 9.8e-17 89.7 65 56.9
ClCG08G014040 Citrullus lanatus HOM05D007020 ORTHO05D008935 4.9e-16 87.4 71 53.5
Dinv31889 Davidia involucrata HOM05D007020 ORTHO05D008935 6.3e-16 87.0 70 55.7
GSVIVG01008746001 Vitis vinifera HOM05D007020 ORTHO05D008935 6.3e-16 87.0 70 55.7
TAR376G1009 Trochodendron aralioides HOM05D007020 ORTHO05D008935 8.3e-16 86.7 71 53.5
Glyma.04G020900 Glycine max HOM05D007020 ORTHO05D008935 1.4e-15 85.9 71 56.3
Glyma.06G021100 Glycine max HOM05D007020 ORTHO05D008935 1.4e-15 85.9 71 53.5
Potri.002G016800 Populus trichocarpa HOM05D007020 ORTHO05D008935 1.4e-15 85.9 71 54.9
Psat5g012400 Pisum sativum HOM05D007020 ORTHO05D008935 1.8e-15 85.5 71 52.1
VMungo1309G1583 Vigna mungo HOM05D007020 ORTHO05D008935 1.8e-15 85.5 71 56.3
CsaV3_2G024410 Cucumis sativus L. HOM05D007020 ORTHO05D008935 2.4e-15 85.1 70 52.9
Eucgr.F03712 Eucalyptus grandis HOM05D007020 ORTHO05D008935 2.4e-15 85.1 71 54.9
Manes.06G014100 Manihot esculenta HOM05D007020 ORTHO05D008935 4.1e-15 84.3 71 54.9
TPR.G38245 Trifolium pratense HOM05D007020 ORTHO05D008935 4.1e-15 84.3 71 52.1
TWI36G0910 Tripterygium wilfordii HOM05D007020 ORTHO05D008935 4.1e-15 84.3 72 51.4
Aqoxy6G02012 Aquilegia oxysepala HOM05D007020 ORTHO05D008935 5.4e-15 84.0 70 54.3
TAR633G1459 Trochodendron aralioides HOM05D007020 ORTHO05D008935 5.4e-15 84.0 71 50.7
AUR62036707 Chenopodium quinoa HOM05D007020 ORTHO05D008935 7.0e-15 83.6 63 58.7
Sabra02G0013400 Salix brachista HOM05D007020 ORTHO05D008935 7.0e-15 83.6 70 54.3
SGA_v2.0_scaffold96G28944 Striga asiatica HOM05D007020 ORTHO05D008935 7.0e-15 83.6 70 55.7
vmacro21850 Vaccinium macrocarpon HOM05D007020 ORTHO05D008935 7.0e-15 83.6 72 54.2
AUR62013887 Chenopodium quinoa HOM05D007020 ORTHO05D008935 9.2e-15 83.2 63 58.7
QL02p012883 Quercus lobata HOM05D007020 ORTHO05D008935 9.2e-15 83.2 65 58.5
Lalb_Chr08g0246281 Lupinus albus HOM05D007020 ORTHO05D008935 1.6e-14 82.4 71 52.1
Gohir.D05G186100 Gossypium hirsutum HOM05D007020 ORTHO05D008935 2.0e-14 82.0 70 54.3
HanXRQChr05g0146601 Helianthus annuus HOM05D007020 ORTHO05D008935 2.0e-14 82.0 72 52.8
ECA232G4433 Erigeron canadensis HOM05D007020 ORTHO05D008935 2.7e-14 81.6 72 52.8
Haze_22697 Corylus avellana HOM05D007020 ORTHO05D008935 3.5e-14 81.3 70 54.3
Lj4A801T43 Lonicera japonica HOM05D007020 ORTHO05D008935 3.5e-14 81.3 71 53.5
Nn3g20659 Nelumbo nucifera HOM05D007020 ORTHO05D008935 3.5e-14 81.3 70 52.9
Phvul.009G019500 Phaseolus vulgaris HOM05D007020 ORTHO05D008935 3.5e-14 81.3 71 53.5
PGR031G0358 Punica granatum HOM05D007020 ORTHO05D008935 3.5e-14 81.3 70 52.9
Hma1.2p1_1598F.1_g292910 Hydrangea macrophylla HOM05D007020 ORTHO05D008935 4.6e-14 80.9 70 52.9
Ca_15469_v3 Cicer arietinum L. HOM05D007020 ORTHO05D008935 5.9e-14 80.5 69 52.2
Actinidia17018 Actinidia chinensis HOM05D007020 ORTHO05D008935 7.8e-14 80.1 71 49.3
Cpa.g.sc26.268 Carica papaya HOM05D007020 ORTHO05D008935 7.8e-14 80.1 71 52.1
Thecc.08G051000 Theobroma cacao HOM05D007020 ORTHO05D008935 7.8e-14 80.1 70 54.3
Ah.11g040270 Amaranthus hybridus HOM05D007020 ORTHO05D008935 1.3e-13 79.3 68 52.9
Lj1g0017386 Lotus japonicus HOM05D007020 ORTHO05D008935 1.3e-13 79.3 71 50.7
arahy.Tifrunner.gnm1.ann1.W20NI2 Arachis hypogaea HOM05D007020 ORTHO05D008935 2.3e-13 78.6 69 49.3
arahy.Tifrunner.gnm1.ann1.YGS75T Arachis hypogaea HOM05D007020 ORTHO05D008935 2.3e-13 78.6 69 49.3
CDE02G2299 Ceratophyllum demersum HOM05D000059 ORTHO05D008935 2.9e-13 78.2 71 53.5
Duzib093G0969 Durio zibethinus HOM05D007020 ORTHO05D008935 2.9e-13 78.2 71 50.7
Medtr3g114540 Medicago truncatula HOM05D007020 ORTHO05D008935 3.9e-13 77.8 71 49.3
Sc26g0004460 Simmondsia chinensis HOM05D007020 ORTHO05D008935 6.6e-13 77.0 64 53.1
MBI17_g14568_MAGBIO Magnolia biondii HOM05D007020 ORTHO05D008935 8.6e-13 76.6 71 47.9
Oeu014023.1 Olea europaea HOM05D007020 ORTHO05D008935 1.1e-12 76.3 70 54.3
Peaxi162Scf00174g00717 Petunia axillaris HOM05D007020 ORTHO05D008935 1.5e-12 75.9 70 50.0
PSO170G4315 Papaver somniferum HOM05D007020 ORTHO05D008935 1.9e-12 75.5 64 51.6
SHI08019 Sapria himalayana HOM05D007020 ORTHO05D008935 1.9e-12 75.5 71 46.5
PGSC0003DMG400009884 Solanum tuberosum HOM05D007020 ORTHO05D008935 1.9e-12 75.5 71 52.1
CAN.G311.66 Capsicum annuum HOM05D007020 ORTHO05D008935 3.3e-12 74.7 71 52.1
Solyc04g081920.3 Solanum lycopersicum HOM05D007020 ORTHO05D008935 4.3e-12 74.3 71 52.1
HPP92_004932 Vanilla planifolia HOM05D007020 ORTHO05D008935 5.6e-12 73.9 64 51.6
EL10Ac1g02092 Beta vulgaris HOM05D007020 ORTHO05D008935 7.3e-12 73.6 64 51.6
DCAR_022941 Daucus carota HOM05D007020 ORTHO05D008935 7.3e-12 73.6 71 46.5
Rhsim06G0012300 Rhododendron simsii HOM05D007020 ORTHO05D008935 9.5e-12 73.2 72 50.0
Cc10_g01170 Coffea canephora HOM05D007020 ORTHO05D008935 1.6e-11 72.4 71 50.7
Os06g0717400 Oryza sativa ssp. japonica HOM05D007020 ORTHO05D008935 1.6e-11 72.4 65 44.6
Nitab4.5_0003030g0130 Nicotiana tabacum HOM05D007020 ORTHO05D008935 3.6e-11 71.2 70 47.1
SEGI_18542 Sequoiadendron giganteum HOM05D007020 ORTHO05D008935 4.7e-11 70.9 64 48.4
Migut.C00895 Erythranthe guttata HOM05D007020 ORTHO05D008935 6.1e-11 70.5 71 52.1
ATR0661G229 Amborella trichopoda HOM05D007020 ORTHO05D008935 3.4e-09 64.7 64 46.9
SMO169G0131 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 1.9e-07 58.9 52 48.1
SMO169G0259 Selaginella moellendorffii HOM05D007020 ORTHO05D008935 1.9e-07 58.9 52 48.1
Pp3c21_5880 Physcomitrium patens HOM05D007020 ORTHO05D008935 2.4e-07 58.5 65 41.5
Cre02.g078750 Chlamydomonas reinhardtii HOM05D007020 ORTHO05D008935 2.7e-06 55.1 63 42.9


User provided reference genes

Program Settings