Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 5.1e-105 384.4 194 100.0
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 4.4e-72 275.0 257 60.3
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 3.1e-70 268.9 257 59.5
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 9.1e-70 267.3 257 58.8
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 1.3e-68 263.5 257 59.1
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 3.8e-68 261.9 257 57.6
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 3.2e-67 258.8 257 58.4
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 5.5e-67 258.1 258 58.5
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 1.0e-65 253.8 258 55.8
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 1.0e-65 253.8 258 55.8
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 1.0e-65 253.8 258 55.8
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 1.4e-65 253.4 252 57.9
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 4.0e-65 251.9 258 55.4
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 1.2e-64 250.4 258 55.4
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 8.3e-63 244.2 257 54.1
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 6.5e-60 234.6 257 53.3
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 8.5e-60 234.2 257 53.7
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 8.5e-60 234.2 257 52.5
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.5e-59 233.4 257 51.0
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 1.5e-59 233.4 257 52.9
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 1.9e-59 233.0 258 50.8
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 3.2e-59 232.3 258 52.3
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 7.2e-59 231.1 257 50.6
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 9.4e-59 230.7 254 52.0
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.2e-58 230.3 253 50.6
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 2.7e-58 229.2 257 50.6
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 3.6e-58 228.8 257 50.2
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 3.6e-58 228.8 257 50.2
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 3.6e-58 228.8 257 53.3
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 3.6e-58 228.8 257 49.8
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 4.7e-58 228.4 257 50.6
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 4.7e-58 228.4 257 52.5
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 8.0e-58 227.6 251 52.2
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 1.4e-57 226.9 257 49.8
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 1.4e-57 226.9 265 49.1
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 4.0e-57 225.3 257 51.8
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 5.2e-57 224.9 255 51.0
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 5.2e-57 224.9 257 49.0
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 6.8e-57 224.6 257 52.1
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 6.8e-57 224.6 257 48.6
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 6.8e-57 224.6 257 48.6
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 8.8e-57 224.2 257 52.5
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 1.2e-56 223.8 257 48.2
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 1.2e-56 223.8 257 50.6
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 1.2e-56 223.8 258 49.2
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 1.5e-56 223.4 257 51.8
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 2.0e-56 223.0 253 49.0
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 2.6e-56 222.6 253 49.4
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 2.6e-56 222.6 257 50.2
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 3.4e-56 222.2 257 50.6
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 3.4e-56 222.2 253 49.4
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 4.4e-56 221.9 257 47.9
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 4.4e-56 221.9 257 49.8
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 7.5e-56 221.1 257 48.2
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 7.5e-56 221.1 254 50.4
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 7.5e-56 221.1 257 48.2
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 9.8e-56 220.7 257 49.0
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 9.8e-56 220.7 257 48.6
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 9.8e-56 220.7 257 50.2
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 9.8e-56 220.7 257 49.4
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.3e-55 220.3 253 49.0
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 1.3e-55 220.3 257 49.8
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 1.3e-55 220.3 253 49.8
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 1.7e-55 219.9 253 49.0
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 2.2e-55 219.5 253 49.0
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 3.7e-55 218.8 257 47.9
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.7e-55 218.8 257 48.6
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 3.7e-55 218.8 257 47.9
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 4.9e-55 218.4 257 48.2
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 6.3e-55 218.0 257 48.2
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 6.3e-55 218.0 257 49.4
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 1.1e-54 217.2 257 47.5
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.4e-54 216.1 257 49.0
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 4.1e-54 215.3 257 47.9
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 5.4e-54 214.9 257 48.6
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 1.2e-53 213.8 257 48.2
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.2e-53 213.8 257 46.7
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.6e-53 213.4 259 49.0
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 2.0e-53 213.0 265 48.3
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.0e-53 213.0 253 48.6
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 2.7e-53 212.6 253 48.2
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 2.7e-53 212.6 253 48.6
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 3.5e-53 212.2 264 47.7
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 3.5e-53 212.2 281 45.6
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 4.5e-53 211.8 249 48.2
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 4.5e-53 211.8 281 45.6
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 5.9e-53 211.5 257 48.6
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 7.7e-53 211.1 257 45.9
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 1.0e-52 210.7 257 47.9
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 1.3e-52 210.3 254 47.6
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.7e-52 209.9 257 45.9
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 1.7e-52 209.9 257 47.9
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 2.3e-52 209.5 257 47.1
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 3.8e-52 208.8 257 46.3
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 3.8e-52 208.8 257 48.6
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 1.1e-51 207.2 254 46.5
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 1.1e-51 207.2 257 46.3
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 3.3e-51 205.7 254 46.1
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 4.3e-51 205.3 257 45.9
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 4.3e-51 205.3 257 45.9
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 5.6e-51 204.9 253 47.0
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 7.3e-51 204.5 257 45.9
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 9.5e-51 204.1 257 47.5
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 3.6e-50 202.2 257 46.3
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 4.7e-50 201.8 255 46.7
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 6.1e-50 201.4 253 46.2
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 6.1e-50 201.4 257 46.3
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.0e-49 200.7 254 46.1
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 4.4e-48 195.3 258 45.0
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 4.4e-48 195.3 252 45.2
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.4e-46 190.3 252 44.4
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.8e-46 189.9 257 44.0
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 2.4e-46 189.5 187 55.1
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 4.1e-46 188.7 252 43.7
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 7.0e-46 188.0 253 43.9
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 2.7e-45 186.0 254 43.3
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 8.6e-44 181.0 226 50.4
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 3.3e-43 179.1 257 41.6
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 3.6e-42 175.6 257 41.6
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 2.3e-41 172.9 257 42.8
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.7e-39 166.8 263 39.9
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 2.4e-38 162.9 230 45.2
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 4.7e-34 148.7 253 38.7
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 4.7e-34 148.7 262 36.6
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 8.9e-33 144.4 83 79.5
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 1.2e-32 144.1 83 78.3
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 2.6e-32 142.9 93 75.3
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 8.3e-31 137.9 93 67.7
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.1e-30 137.5 93 69.9
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.1e-30 137.5 93 66.7
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.4e-30 136.3 82 79.3
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.4e-30 136.3 93 69.9
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 5.4e-30 135.2 93 69.9
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 7.8e-29 131.3 93 67.7
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 2.1e-26 123.2 91 67.0
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 3.6e-26 122.5 161 49.1
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 4.7e-26 122.1 88 69.3
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.7e-26 122.1 97 61.9
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 6.2e-26 121.7 91 64.8
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 4.0e-25 119.0 91 62.6
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 5.2e-25 118.6 201 39.3
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 8.9e-25 117.9 255 31.8
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.2e-24 117.5 91 63.7
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.0e-24 116.7 93 59.1
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.4e-24 115.9 91 64.8
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.4e-22 109.8 116 51.7
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.2e-22 109.4 91 60.4
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 9.2e-22 107.8 91 60.4
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 3.5e-21 105.9 82 65.9
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.8e-18 96.3 105 51.4
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.8e-18 96.3 105 51.4
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 8.1e-18 94.7 254 28.7
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 6.6e-12 75.1 54 68.5
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 1.3e-10 70.9 44 72.7
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.3e-10 70.9 48 64.6
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 1.6e-10 70.5 45 71.1
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 2.2e-07 60.1 38 73.7


User provided reference genes

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