Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 0.0e+00 1151.0 596 100.0
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 4.2e-307 1057.4 600 91.8
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.0e-292 1009.6 604 88.7
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.1e-283 979.5 611 85.9
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.6e-282 974.5 601 86.2
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 3.2e-275 951.4 602 83.4
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 6.1e-274 947.2 601 83.4
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.8e-273 945.7 601 83.2
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 3.0e-273 944.9 599 83.0
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 6.7e-273 943.7 634 80.6
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 6.7e-273 943.7 601 83.0
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 1.6e-258 896.0 610 79.5
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.2e-256 889.8 550 86.4
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 4.0e-225 785.0 611 70.2
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 7.8e-221 770.8 610 71.3
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 7.5e-216 754.2 612 68.0
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 4.9e-215 751.5 613 69.3
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 8.3e-215 750.7 612 68.0
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 3.2e-214 748.8 603 67.8
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 7.1e-214 747.7 627 66.2
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.2e-213 746.9 614 67.8
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 2.7e-213 745.7 623 66.5
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 3.5e-213 745.3 610 67.4
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 6.0e-213 744.6 608 67.3
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 1.0e-212 743.8 618 66.8
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 3.9e-212 741.9 618 67.0
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 6.2e-210 734.6 610 66.9
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 8.9e-209 730.7 633 66.2
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 2.6e-208 729.2 615 66.8
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 9.9e-208 727.2 624 65.5
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 1.3e-207 726.9 627 66.2
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 2.2e-207 726.1 624 65.7
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 4.9e-207 724.9 624 66.8
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 6.4e-207 724.5 622 65.6
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.4e-206 722.6 623 65.0
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 9.2e-206 720.7 608 66.1
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 3.5e-205 718.8 612 65.5
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.6e-205 718.4 609 65.5
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 6.0e-205 718.0 656 62.5
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.9e-204 715.3 625 65.1
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.1e-203 713.8 614 65.5
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 2.1e-202 709.5 608 65.3
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 6.2e-202 708.0 612 64.9
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 5.8e-200 701.4 603 65.2
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.8e-200 701.4 651 62.5
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 5.8e-200 701.4 610 65.7
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.3e-199 700.3 617 64.2
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 3.8e-199 698.7 614 63.2
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 4.2e-198 695.3 612 64.4
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 1.6e-197 693.3 625 62.6
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 2.1e-197 693.0 614 64.5
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 3.5e-197 692.2 613 64.8
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.0e-196 689.1 615 63.7
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 3.9e-196 688.7 619 62.7
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 8.7e-196 687.6 638 63.3
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 1.1e-195 687.2 616 62.8
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 1.9e-195 686.4 615 63.4
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.9e-195 686.4 626 63.9
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.6e-194 682.2 612 63.4
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-194 682.2 614 62.4
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 6.2e-194 681.4 603 63.0
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-193 680.6 616 62.5
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 2.4e-193 679.5 616 62.7
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 4.0e-193 678.7 589 65.2
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 9.0e-193 677.6 614 63.8
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.2e-191 672.9 616 62.0
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 4.9e-191 671.8 617 61.4
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 2.1e-189 666.4 616 61.9
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 2.7e-189 666.0 623 61.8
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 3.5e-189 665.6 627 60.4
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 6.0e-189 664.8 612 61.6
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 7.9e-189 664.5 619 60.7
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 1.3e-188 663.7 621 62.3
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-188 663.7 619 60.9
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 1.5e-187 660.2 600 62.3
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 4.3e-187 658.7 634 61.0
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 4.5e-184 648.7 626 59.3
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 9.9e-184 647.5 551 65.3
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.7e-183 646.7 488 70.1
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 2.9e-183 646.0 607 61.9
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.9e-183 646.0 648 58.2
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 2.9e-183 646.0 655 57.7
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 4.9e-183 645.2 605 60.0
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.9e-182 643.3 643 58.8
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 7.9e-181 637.9 637 58.2
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 5.1e-180 635.2 567 63.0
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 9.6e-179 630.9 606 57.9
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 2.4e-177 626.3 625 58.4
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.5e-176 623.6 615 60.0
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 9.3e-174 614.4 618 59.2
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 3.5e-173 612.5 615 57.9
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.0e-172 610.9 559 62.3
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 2.3e-172 609.8 602 59.1
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.7e-171 604.4 595 59.5
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 1.3e-170 604.0 607 56.0
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 6.9e-169 598.2 616 57.0
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 1.5e-168 597.0 334 89.5
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.6e-168 596.3 616 57.3
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.1e-166 590.9 527 63.6
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 7.2e-166 588.2 620 56.1
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.1e-161 572.8 585 57.3
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.0e-156 557.8 555 59.3
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 3.2e-150 536.2 557 57.3
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 7.2e-150 535.0 524 59.9
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 2.8e-146 523.1 339 79.1
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 5.0e-143 512.3 580 54.5
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 2.7e-141 506.5 340 78.5
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 4.7e-141 505.8 398 67.8
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.4e-140 504.2 629 51.7
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 5.9e-136 488.8 604 49.7
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 3.6e-133 479.6 319 76.8
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 8.8e-132 474.9 514 54.9
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.6e-128 464.2 431 59.2
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.7e-119 434.1 372 69.1
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 8.0e-117 425.2 518 51.2
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 9.2e-113 411.8 276 79.7
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.2e-113 411.8 501 51.7
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.7e-111 407.5 393 61.3
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 9.5e-110 401.7 644 42.4
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 2.1e-96 357.5 260 78.1
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-93 346.7 366 53.6
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-90 338.2 338 59.2
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 4.9e-90 336.3 490 44.1
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 3.6e-85 320.1 196 83.7
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 9.3e-81 305.4 692 36.8
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-79 300.8 380 48.7
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 8.7e-79 298.9 325 54.2
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.1e-78 298.5 337 55.5
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 4.0e-76 290.0 229 66.8
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 4.6e-72 276.6 224 62.1
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.2e-59 235.3 238 58.0
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 2.1e-56 224.6 272 51.1
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-53 214.9 247 50.6
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.1e-52 212.2 301 42.5
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 2.9e-50 204.1 731 29.4
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 1.6e-48 198.4 271 49.4
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 7.9e-48 196.1 106 90.6
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 1.8e-47 194.9 128 78.1
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 2.5e-46 191.0 268 46.3
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 8.2e-45 186.0 265 46.4
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.1e-44 184.1 149 68.5
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.5e-43 180.3 243 49.4
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.8e-39 168.3 110 75.5
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 2.3e-39 167.9 269 40.5
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 3.2e-33 147.5 269 40.1
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 7.2e-33 146.4 75 98.7
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.2e-32 145.6 75 98.7
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 4.7e-32 143.7 319 34.2
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 1.0e-31 142.5 81 90.1
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.7e-29 134.0 234 37.6
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 8.2e-29 132.9 204 48.0
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.1e-28 130.6 174 43.7
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 4.1e-28 130.6 151 49.7
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 5.3e-28 130.2 126 57.9
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.7e-26 125.2 322 34.5
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 4.0e-23 114.0 383 29.5
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 4.0e-23 114.0 120 53.3
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 3.7e-21 107.5 254 29.9
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 4.8e-21 107.1 120 52.5
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 4.8e-21 107.1 133 42.9
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 8.3e-21 106.3 153 42.5
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.0e-19 101.7 163 47.9
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.0e-19 101.7 142 51.4
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.2e-18 98.2 147 46.9
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 8.5e-18 96.3 149 46.3
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 1.9e-17 95.1 77 62.3
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 7.5e-14 83.2 135 46.7
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 8.3e-13 79.7 107 46.7
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 2.8e-08 64.7 47 66.0
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 1.0e-07 62.8 62 48.4
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 3.0e-07 61.2 38 89.5
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 8.9e-07 59.7 38 86.8
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.5e-06 58.9 82 46.3
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 4.4e-06 57.4 39 71.8
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 7.5e-06 56.6 73 43.8
PSO017G2483 Papaver somniferum HOM05D003724 ORTHO05D004367 9.8e-06 56.2 92 38.0


User provided reference genes

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