Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 7.4e-308 1059.7 527 100.0
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 1.7e-187 659.8 324 100.0
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 7.0e-157 558.1 326 85.0
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 3.6e-153 545.8 327 86.2
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 8.9e-152 541.2 316 84.5
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 2.9e-150 536.2 319 83.7
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 8.6e-147 524.6 327 82.9
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 1.9e-146 523.5 327 82.6
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 9.5e-146 521.2 327 82.3
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 3.6e-145 519.2 327 82.0
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 3.6e-145 519.2 327 82.0
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 7.1e-141 505.0 319 80.9
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 2.4e-117 426.8 329 68.4
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 2.6e-111 406.8 293 69.6
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 2.9e-110 403.3 274 72.3
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 4.9e-110 402.5 293 68.6
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 6.4e-110 402.1 289 70.6
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 1.9e-109 400.6 288 70.1
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 4.2e-109 399.4 293 68.3
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 4.2e-109 399.4 292 69.5
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 5.4e-109 399.1 285 69.8
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 5.4e-109 399.1 294 68.0
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 7.1e-109 398.7 267 73.8
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 7.1e-109 398.7 270 72.6
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 1.2e-108 397.9 272 72.1
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 2.7e-108 396.7 287 70.0
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 3.5e-108 396.4 281 70.8
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 4.6e-108 396.0 270 71.9
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 7.9e-108 395.2 283 70.7
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 7.9e-108 395.2 272 72.1
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 1.0e-107 394.8 278 70.5
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 1.3e-107 394.4 293 68.3
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 1.8e-107 394.0 281 71.5
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 1.1e-106 391.3 286 67.8
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 1.1e-106 391.3 270 70.7
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 1.1e-106 391.3 299 65.6
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 2.5e-106 390.2 278 69.1
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 2.5e-106 390.2 278 69.8
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 4.3e-106 389.4 287 67.2
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 7.4e-106 388.7 271 69.4
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 1.3e-105 387.9 301 65.8
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 6.2e-105 385.6 275 69.5
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 6.2e-105 385.6 280 69.3
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 8.1e-105 385.2 266 71.8
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 1.8e-104 384.0 278 68.7
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 1.8e-104 384.0 265 70.9
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 6.9e-104 382.1 270 70.0
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 6.9e-104 382.1 278 67.6
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 1.5e-103 380.9 265 70.9
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 2.6e-103 380.2 279 67.7
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 3.4e-103 379.8 274 66.8
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 1.3e-102 377.9 287 66.9
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 1.3e-102 377.9 291 66.7
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 1.7e-102 377.5 272 68.4
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 2.2e-102 377.1 285 65.3
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 3.8e-102 376.3 293 65.2
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 6.5e-102 375.6 290 65.2
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 6.5e-102 375.6 244 74.6
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 6.5e-102 375.6 298 65.4
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 1.1e-101 374.8 272 68.8
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 1.1e-101 374.8 271 66.1
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 1.9e-101 374.0 296 64.5
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 2.5e-101 373.6 272 68.0
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 7.1e-101 372.1 265 70.2
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 9.3e-101 371.7 265 70.2
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 4.6e-100 369.4 223 78.5
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 6.0e-100 369.0 285 66.0
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 6.0e-100 369.0 272 68.4
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 1.0e-99 368.2 278 68.3
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.0e-99 368.2 223 78.0
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 2.3e-99 367.1 266 69.9
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 3.9e-99 366.3 265 69.8
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 6.7e-99 365.5 278 66.2
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 8.7e-99 365.2 282 66.3
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 2.5e-98 363.6 292 64.0
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 4.3e-98 362.8 274 67.9
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 7.4e-98 362.1 236 72.0
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 1.3e-97 361.3 272 65.1
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 2.1e-97 360.5 277 66.4
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 6.2e-97 359.0 283 65.4
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 1.8e-96 357.5 224 75.4
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 3.1e-96 356.7 277 67.5
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 9.0e-96 355.1 277 67.1
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 9.0e-96 355.1 249 72.7
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 1.5e-95 354.4 278 62.2
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 2.6e-95 353.6 304 62.8
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 2.6e-95 353.6 294 62.2
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 3.4e-95 353.2 296 60.5
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 5.0e-94 349.4 208 78.4
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 6.5e-94 349.0 200 81.0
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 8.4e-94 348.6 291 61.9
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 1.4e-93 347.8 289 63.3
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 9.3e-93 345.1 198 81.8
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 1.1e-90 338.2 298 59.1
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 4.3e-90 336.3 261 64.8
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 1.0e-86 325.1 174 85.1
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 6.5e-86 322.4 279 63.4
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 1.2e-84 318.2 272 61.0
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 1.5e-82 311.2 218 70.6
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 3.1e-80 303.5 272 59.2
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 1.4e-77 294.7 190 70.5
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 5.3e-72 276.2 268 51.5
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 1.5e-71 274.6 198 65.7
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 4.7e-68 263.1 270 52.6
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 4.1e-64 250.0 138 82.6
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 4.1e-64 250.0 138 82.6
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 1.2e-58 231.9 155 71.6
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 2.0e-58 231.1 159 68.6
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 2.9e-54 217.2 147 68.7
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 3.5e-47 193.7 111 81.1
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 4.4e-42 176.8 166 50.6
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 3.3e-29 134.0 78 75.6
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 3.4e-26 124.0 130 53.1
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 1.8e-19 101.7 133 45.1
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 4.0e-19 100.5 59 81.4
CARHR156600 Cardamine hirsuta HOM05D006818 ORTHO05D008674 2.4e-16 91.3 90 61.1
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 3.8e-09 67.4 84 56.0
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 6.4e-09 66.6 90 52.2
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 1.4e-08 65.5 90 51.1
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 2.4e-08 64.7 90 51.1
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 4.2e-08 63.9 88 47.7
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.2e-07 62.4 82 53.7
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 7.8e-07 59.7 88 47.7
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 1.7e-06 58.5 88 47.7
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.7e-06 58.5 88 47.7
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 5.1e-06 57.0 174 27.0
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 6.6e-06 56.6 81 46.9
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 8.7e-06 56.2 88 46.6
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 8.7e-06 56.2 88 46.6


User provided reference genes

Program Settings