Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 0.0e+00 1372.1 670 100.0
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 0.0e+00 1296.2 675 93.8
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1295.4 676 93.5
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1293.9 675 93.6
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1293.5 674 93.8
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 0.0e+00 1293.5 676 93.5
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1292.7 676 93.2
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 0.0e+00 1287.7 679 92.6
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 0.0e+00 1277.3 676 92.3
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 0.0e+00 1271.5 676 92.8
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 0.0e+00 1265.4 672 90.8
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 0.0e+00 1223.0 673 89.3
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 0.0e+00 1184.1 677 84.3
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 0.0e+00 1139.8 670 81.8
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 7.5e-289 996.9 680 73.5
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 5.4e-287 990.7 679 72.5
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 7.0e-287 990.3 683 73.1
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 7.0e-287 990.3 679 73.0
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 1.0e-285 986.5 623 76.2
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 1.2e-281 973.0 623 74.6
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 6.4e-280 967.2 680 70.7
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 6.4e-280 967.2 673 71.9
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 1.1e-279 966.5 629 73.8
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 2.4e-279 965.3 661 71.7
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 7.0e-279 963.8 690 70.9
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 9.2e-279 963.4 678 70.5
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 1.1e-276 956.4 673 70.4
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 2.5e-276 955.3 677 70.5
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 1.2e-275 953.0 673 71.0
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 3.6e-275 951.4 681 70.2
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 1.2e-273 946.4 665 69.8
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 2.4e-271 938.7 669 69.2
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 3.5e-270 934.9 670 69.7
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 6.0e-270 934.1 666 68.8
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.0e-269 933.3 678 69.5
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 1.7e-269 932.6 664 69.7
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 1.7e-269 932.6 678 69.9
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 5.1e-269 931.0 675 69.5
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 8.6e-269 930.2 666 68.0
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 1.1e-268 929.9 625 72.5
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.3e-268 928.3 666 68.5
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 1.2e-267 926.4 680 68.4
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 2.1e-267 925.6 678 69.2
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 4.7e-267 924.5 670 68.2
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 1.4e-266 922.9 627 70.5
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 1.8e-266 922.5 683 69.3
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 1.8e-266 922.5 673 70.1
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 2.4e-266 922.2 671 68.9
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 4.0e-266 921.4 614 72.5
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 6.8e-266 920.6 669 68.6
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 8.9e-266 920.2 668 68.1
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 2.6e-265 918.7 677 68.7
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 5.8e-265 917.5 683 69.0
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 3.8e-264 914.8 676 67.2
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 6.4e-264 914.1 667 67.5
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 6.0e-262 907.5 674 67.1
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 1.3e-261 906.4 608 71.7
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 2.3e-261 905.6 608 71.2
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 3.9e-261 904.8 628 71.7
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 6.6e-261 904.0 672 68.8
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 8.7e-261 903.7 658 69.0
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 1.9e-260 902.5 675 68.7
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 4.3e-260 901.4 626 72.2
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 5.6e-260 901.0 678 68.6
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 9.6e-260 900.2 678 67.6
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 1.6e-259 899.4 654 68.3
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 3.6e-259 898.3 627 71.0
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 8.1e-259 897.1 680 67.9
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 5.8e-257 891.0 669 68.5
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 1.3e-256 889.8 670 68.4
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 1.7e-256 889.4 637 68.8
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 1.7e-256 889.4 684 64.6
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 2.9e-256 888.6 665 67.8
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 5.4e-255 884.4 678 65.8
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 1.3e-253 879.8 631 69.1
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 5.1e-253 877.9 633 67.5
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 1.9e-252 875.9 685 65.7
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 6.2e-251 870.9 572 71.9
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 5.3e-250 867.8 656 65.1
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 1.0e-245 853.6 620 67.3
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 1.4e-239 833.2 644 64.9
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 1.0e-237 827.0 633 67.0
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 7.1e-231 804.3 790 54.8
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 3.5e-230 802.0 629 65.3
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 1.3e-229 800.0 550 72.4
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.6e-227 793.1 666 61.3
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 2.8e-227 792.3 550 72.2
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 3.7e-227 792.0 554 71.5
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 2.6e-225 785.8 585 64.8
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.3e-224 783.5 552 70.1
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 5.5e-223 778.1 792 54.8
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 2.5e-215 752.7 664 59.9
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 4.1e-210 735.3 590 65.1
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 1.2e-196 690.6 610 57.7
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 5.4e-194 681.8 462 71.4
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 7.0e-186 654.8 784 49.2
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 3.7e-163 579.3 431 66.4
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 6.2e-142 508.8 427 58.8
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 2.4e-133 480.3 365 66.0
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 3.1e-125 453.4 533 46.7
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 1.8e-117 427.6 548 45.3
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 5.0e-107 392.9 339 59.0
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 3.2e-106 390.2 279 69.2
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 4.7e-97 359.8 293 61.8
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.0e-96 357.1 326 58.0
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.0e-96 357.1 326 58.0
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 4.8e-86 323.2 559 37.6
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.8e-77 294.7 231 61.9
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 1.1e-74 285.4 235 63.0
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 7.0e-61 239.6 574 30.7
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 3.0e-51 207.6 256 44.5
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 3.0e-51 207.6 240 51.2
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 7.6e-39 166.4 184 48.4
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.8e-33 147.9 135 56.3
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 4.0e-32 144.1 124 55.6
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 6.9e-32 143.3 142 52.1
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 6.2e-09 67.0 120 36.7


User provided reference genes

Program Settings