Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 4.0e-169 599.0 585 100.0
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 3.5e-157 559.3 588 96.3
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 3.6e-154 549.3 587 95.7
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 9.9e-152 541.2 596 93.0
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 1.1e-150 537.7 585 94.2
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 7.3e-139 498.4 593 90.9
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 1.4e-137 494.2 632 84.7
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 1.8e-137 493.8 590 91.0
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 1.1e-131 474.6 676 78.8
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 1.5e-131 474.2 335 90.1
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 5.3e-129 465.7 607 85.3
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 4.2e-118 429.5 344 82.3
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 3.3e-115 419.9 589 84.6
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 2.8e-106 390.2 335 77.0
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 4.8e-106 389.4 335 78.2
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 1.8e-105 387.5 335 76.7
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 2.0e-104 384.0 335 76.7
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 2.6e-104 383.6 336 76.5
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 1.7e-103 380.9 335 75.5
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 5.0e-103 379.4 335 75.5
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 2.5e-102 377.1 337 75.4
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 2.5e-102 377.1 337 75.4
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 7.2e-102 375.6 333 76.3
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 3.6e-101 373.2 335 74.6
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 4.6e-101 372.9 335 74.0
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 4.6e-101 372.9 336 73.5
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 6.1e-101 372.5 336 74.4
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 3.9e-100 369.8 303 80.9
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 6.7e-100 369.0 332 75.0
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 6.7e-100 369.0 310 80.3
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 3.3e-99 366.7 336 74.1
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 4.8e-98 362.8 314 78.0
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 1.1e-97 361.7 304 80.3
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 1.8e-97 360.9 321 76.0
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 5.3e-97 359.4 337 73.0
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 2.0e-96 357.5 296 80.7
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 2.0e-96 357.5 338 72.8
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 2.0e-96 357.5 332 73.5
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 2.6e-96 357.1 304 79.3
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 3.4e-96 356.7 338 72.8
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 5.9e-96 355.9 338 72.8
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 5.9e-96 355.9 299 73.9
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 3.8e-95 353.2 320 75.3
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 6.5e-95 352.4 327 72.8
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 6.5e-95 352.4 308 76.9
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 6.5e-95 352.4 308 76.9
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 8.5e-95 352.1 337 71.8
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 8.5e-95 352.1 296 79.4
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 4.2e-94 349.7 304 76.3
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 9.4e-94 348.6 296 80.1
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 6.1e-93 345.9 335 69.6
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 1.0e-92 345.1 333 70.6
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 1.4e-92 344.7 296 79.4
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 1.8e-92 344.4 304 75.0
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 3.9e-92 343.2 296 79.1
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 5.1e-92 342.8 303 77.2
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 6.7e-92 342.4 307 75.2
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 1.1e-91 341.7 314 73.6
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 1.1e-91 341.7 304 73.7
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 1.5e-91 341.3 304 74.0
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 2.0e-91 340.9 335 70.7
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 2.0e-91 340.9 343 69.1
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 2.0e-91 340.9 321 71.3
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 3.3e-91 340.1 335 70.4
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 4.4e-91 339.7 304 73.4
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 9.7e-91 338.6 320 73.4
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 1.3e-90 338.2 306 74.2
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 1.7e-90 337.8 329 71.1
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 8.2e-90 335.5 335 69.3
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 8.2e-90 335.5 315 71.7
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 1.1e-89 335.1 293 77.5
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 1.8e-89 334.3 310 72.6
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 3.1e-89 333.6 304 75.0
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 4.1e-89 333.2 304 73.7
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 5.3e-89 332.8 308 67.2
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 7.0e-89 332.4 336 68.5
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 4.5e-88 329.7 319 72.4
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 7.7e-88 328.9 335 54.0
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 7.7e-88 328.9 299 73.9
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.7e-87 327.8 315 71.7
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.7e-87 327.8 335 69.0
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 2.9e-87 327.0 306 71.6
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 3.8e-87 326.6 299 74.6
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 3.8e-87 326.6 335 69.0
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 1.9e-86 324.3 304 72.7
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.9e-86 324.3 335 68.7
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 5.5e-86 322.8 335 68.4
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.6e-85 321.2 354 51.7
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 2.7e-85 320.5 304 55.6
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 2.0e-83 314.3 342 66.4
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 2.8e-82 310.5 307 69.7
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 2.5e-78 297.4 338 67.2
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 6.3e-74 282.7 309 67.6
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 1.0e-71 275.4 446 94.4
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 1.7e-71 274.6 293 70.6
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 4.2e-70 270.0 317 51.4
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 4.0e-68 263.5 292 65.8
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 1.8e-65 254.6 284 68.3
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 2.1e-61 241.1 211 83.9
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 1.2e-53 215.3 581 34.1
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 2.8e-53 214.2 175 66.3
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.4e-49 201.8 136 74.3
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 1.4e-49 201.8 147 67.3
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 3.0e-47 194.1 172 59.9
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 1.3e-42 178.7 103 84.5
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 2.1e-37 161.4 80 95.0
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 1.8e-36 158.3 103 72.8
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 3.4e-35 154.1 78 92.3
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 3.7e-34 150.6 263 49.4
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.9e-33 148.3 124 61.3
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 6.6e-31 139.8 262 51.1
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 2.5e-30 137.9 139 77.7
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 7.3e-30 136.3 263 44.5
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 2.4e-28 131.3 368 33.2
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 9.0e-20 102.8 352 30.4
BcaC08g44952 Brassica carinata HOM05D006642 ORTHO05D032904 7.3e-14 83.2 96 55.2
BolC6t37748H Brassica oleracea HOM05D000461 ORTHO05D001840 1.5e-11 75.5 43 88.4
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 6.0e-08 63.5 113 29.2
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.3e-07 62.4 103 32.0
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 8.7e-07 59.7 93 34.4
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 1.1e-06 59.3 96 33.3
Prupe.7G151800 Prunus persica HOM05D000891 ORTHO05D000761 1.1e-06 59.3 86 34.9
DCAR_025928 Daucus carota HOM05D000891 ORTHO05D000761 1.5e-06 58.9 97 39.2
FAN09G2418 Fragaria x ananassa HOM05D000855 ORTHO05D008530 1.5e-06 58.9 93 34.4
FvH4_6g15290 Fragaria vesca HOM05D000855 ORTHO05D008530 1.9e-06 58.5 93 34.4
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 2.5e-06 58.2 81 38.3
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 4.3e-06 57.4 93 35.5
Sp7g34340 Schrenkiella parvula HOM05D000891 ORTHO05D000761 4.3e-06 57.4 108 31.5
SEGI_21341 Sequoiadendron giganteum HOM05D000891 ORTHO05D002107 4.3e-06 57.4 95 35.8
Duzib264G1293 Durio zibethinus HOM05D000891 ORTHO05D000761 5.6e-06 57.0 108 32.4
Cc07_g09260 Coffea canephora HOM05D000891 ORTHO05D000761 7.4e-06 56.6 104 35.6
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 7.4e-06 56.6 93 36.6
MD02G1151200 Malus domestica HOM05D000891 ORTHO05D000761 7.4e-06 56.6 100 30.0
Aqoxy3G04282 Aquilegia oxysepala HOM05D000891 ORTHO05D000761 9.6e-06 56.2 108 31.5
CANSAT01G1424 Cannabis sativa HOM05D000891 ORTHO05D000761 9.6e-06 56.2 107 32.7


User provided reference genes

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