Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 3.2e-159 565.1 294 100.0
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 1.3e-120 436.8 300 79.3
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 3.8e-120 435.3 301 78.7
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 1.2e-118 430.3 297 80.5
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 4.7e-118 428.3 296 80.7
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 5.7e-116 421.4 293 79.2
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 1.0e-112 410.6 297 77.1
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 1.7e-112 409.8 296 77.4
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 1.0e-109 400.6 293 76.1
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 7.8e-97 357.8 227 82.4
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 1.5e-87 327.0 289 66.8
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 3.3e-87 325.9 298 62.8
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 6.0e-73 278.5 298 53.0
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 3.6e-70 269.2 309 52.4
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 8.1e-70 268.1 306 51.0
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 8.9e-69 264.6 311 51.4
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 2.6e-68 263.1 311 51.1
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 4.4e-68 262.3 303 51.8
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 2.9e-67 259.6 305 49.8
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 2.9e-67 259.6 298 50.3
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 1.4e-66 257.3 300 51.0
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 2.4e-66 256.5 316 49.1
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.4e-66 256.5 308 51.9
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 4.2e-66 255.8 301 50.8
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 7.1e-66 255.0 308 48.7
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.6e-65 253.8 307 48.9
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.7e-65 253.1 323 47.7
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 4.6e-65 252.3 317 49.2
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 4.6e-65 252.3 305 49.2
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 3.0e-64 249.6 315 47.3
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 3.9e-64 249.2 295 51.2
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 5.1e-64 248.8 300 49.7
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 8.7e-64 248.1 311 48.6
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.5e-63 247.3 214 59.8
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 7.3e-63 245.0 308 50.0
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 9.6e-63 244.6 311 47.6
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 4.8e-62 242.3 312 47.4
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 5.3e-61 238.8 316 46.2
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 6.9e-61 238.4 302 48.0
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 9.0e-61 238.0 293 49.1
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 1.2e-60 237.7 296 49.7
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 1.5e-60 237.3 293 48.8
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 2.6e-60 236.5 214 59.3
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 4.5e-60 235.7 312 46.5
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 4.5e-60 235.7 284 48.9
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 2.9e-59 233.0 298 46.3
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 4.9e-59 232.3 301 47.2
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 1.4e-58 230.7 313 44.7
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 5.4e-58 228.8 313 44.1
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 1.6e-57 227.3 302 46.7
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 3.5e-57 226.1 313 43.5
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 6.0e-57 225.3 294 45.9
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 1.0e-56 224.6 297 45.8
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 1.0e-56 224.6 276 50.7
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 1.0e-56 224.6 302 45.0
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 1.5e-55 220.7 293 45.7
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 1.5e-55 220.7 313 44.1
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 2.5e-55 219.9 300 46.3
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 2.5e-55 219.9 312 44.2
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 5.6e-55 218.8 222 52.7
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 5.6e-55 218.8 291 46.7
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 5.6e-55 218.8 305 45.9
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 2.1e-54 216.9 301 46.5
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 2.1e-54 216.9 295 45.8
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 4.8e-54 215.7 268 49.6
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.2e-54 215.3 240 51.2
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 1.5e-52 210.7 301 46.2
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 9.9e-52 208.0 301 45.5
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 2.2e-51 206.8 293 43.3
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 4.9e-51 205.7 310 41.9
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.4e-50 203.4 292 44.9
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.2e-49 201.1 290 42.1
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.2e-49 201.1 290 42.1
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 4.6e-49 199.1 217 51.2
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 6.0e-49 198.7 195 54.9
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.0e-48 198.0 309 41.7
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 3.0e-48 196.4 291 44.7
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 1.1e-47 194.5 308 40.9
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 3.3e-47 193.0 271 44.3
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 4.3e-47 192.6 310 43.2
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 2.8e-46 189.9 271 47.6
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 1.1e-45 188.0 262 46.2
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 3.1e-45 186.4 283 43.5
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 3.1e-45 186.4 288 37.8
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 4.0e-45 186.0 286 42.0
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 9.0e-45 184.9 290 38.6
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 4.5e-44 182.6 306 39.9
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 7.6e-44 181.8 198 53.0
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 2.9e-43 179.9 300 40.7
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 3.2e-42 176.4 203 52.2
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 4.6e-41 172.6 237 46.4
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 1.0e-40 171.4 264 43.2
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.0e-40 171.4 310 39.0
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 6.7e-40 168.7 234 47.4
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 9.6e-39 164.9 216 43.1
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 1.6e-38 164.1 311 35.7
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 8.2e-38 161.8 269 40.9
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 4.5e-36 156.0 251 42.2
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 2.9e-35 153.3 194 49.0
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 6.5e-35 152.1 237 42.2
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 2.7e-33 146.7 235 46.0
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 5.1e-32 142.5 226 42.5
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 2.4e-29 133.7 225 40.4
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 1.2e-28 131.3 275 35.6
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.5e-28 131.0 107 58.9
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 2.0e-28 130.6 136 55.1
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 7.7e-28 128.6 225 39.1
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 2.2e-27 127.1 295 32.5
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 6.5e-27 125.6 139 48.9
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 2.5e-26 123.6 312 32.4
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 1.6e-25 120.9 98 60.2
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 2.3e-24 117.1 266 35.0
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 3.0e-24 116.7 288 30.9
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 4.4e-23 112.8 201 34.8
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 1.3e-22 111.3 63 79.4
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 1.3e-22 111.3 63 79.4
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.8e-21 107.5 204 39.2
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 3.1e-21 106.7 265 27.9
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 7.7e-20 102.1 194 38.1
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 6.1e-17 92.4 200 30.5
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 1.8e-16 90.9 119 44.5
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 8.8e-16 88.6 265 31.7
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 5.7e-15 85.9 62 59.7
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 2.6e-12 77.0 134 38.1
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 2.7e-09 67.0 90 43.3
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 5.2e-08 62.8 138 33.3
BraA03t11621Z Brassica rapa HOM05D005876 ORTHO05D007326 4.4e-07 59.7 80 46.2
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 8.2e-06 55.5 148 26.4


User provided reference genes

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