Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.1e-247 856.7 448 100.0
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 1.3e-233 812.8 448 94.4
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 2.8e-231 805.1 448 93.8
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 7.1e-227 790.4 448 92.4
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 6.0e-226 787.3 448 91.7
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 4.1e-214 748.0 448 88.2
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 7.7e-213 743.8 448 87.5
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 7.7e-213 743.8 448 87.5
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 7.7e-213 743.8 448 87.5
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 8.5e-212 740.3 448 87.7
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 9.4e-211 736.9 448 87.5
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 4.2e-203 711.4 448 85.7
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 8.8e-201 703.7 451 81.6
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.3e-193 679.1 451 80.9
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 4.1e-190 668.3 451 79.4
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.2e-188 662.5 452 78.8
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 2.2e-188 662.5 452 78.8
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.1e-187 660.2 448 78.8
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 4.7e-186 654.8 454 78.2
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 7.5e-184 647.5 452 77.7
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.1e-179 633.6 449 75.1
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 9.5e-179 630.6 449 75.1
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 6.1e-178 627.9 449 75.1
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 3.4e-176 622.1 443 74.0
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.2e-173 613.6 451 73.2
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.0e-172 610.5 455 71.0
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.7e-172 609.8 458 71.6
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 1.7e-172 609.8 456 70.8
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 5.0e-172 608.2 455 70.5
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 6.6e-172 607.8 452 70.8
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 6.6e-172 607.8 449 71.9
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.3e-171 605.1 455 69.9
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 5.6e-171 604.7 456 71.5
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 2.8e-170 602.4 454 70.7
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 1.0e-169 600.5 456 71.1
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.4e-169 600.1 453 70.4
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.4e-169 600.1 453 70.9
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.3e-169 599.4 451 69.6
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 2.3e-169 599.4 456 71.1
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 5.2e-169 598.2 453 69.1
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 8.9e-169 597.4 458 69.7
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.2e-168 597.0 451 69.6
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 4.4e-168 595.1 453 70.9
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 5.8e-168 594.7 458 69.7
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 5.8e-168 594.7 453 70.4
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 1.3e-167 593.6 446 71.1
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 4.9e-167 591.7 454 71.4
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 4.9e-167 591.7 452 70.8
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 8.3e-167 590.9 454 70.7
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 2.4e-166 589.3 459 70.2
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 3.2e-166 589.0 457 69.1
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 3.2e-166 589.0 455 69.5
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 4.1e-166 588.6 459 70.2
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.2e-165 587.0 452 70.1
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.2e-165 587.0 452 70.4
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.6e-165 585.1 456 69.7
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 6.0e-165 584.7 457 68.7
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 3.0e-164 582.4 433 70.4
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 3.9e-164 582.0 454 69.4
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.9e-164 582.0 433 70.4
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 5.0e-164 581.6 452 68.6
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 6.6e-164 581.3 461 68.5
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 8.6e-164 580.9 451 69.4
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 8.6e-164 580.9 452 68.6
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.9e-163 579.7 455 67.3
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 2.5e-163 579.3 452 68.6
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 4.3e-163 578.6 457 69.4
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 7.3e-163 577.8 453 67.3
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 7.3e-163 577.8 449 68.4
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 7.3e-163 577.8 433 69.7
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 6.2e-162 574.7 362 79.8
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 3.1e-161 572.4 453 67.1
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 5.2e-161 571.6 456 68.0
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 1.5e-160 570.1 455 67.5
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.5e-160 570.1 459 66.4
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 3.4e-160 568.9 461 68.5
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 6.4e-159 564.7 461 66.2
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 8.3e-159 564.3 450 68.7
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 3.2e-158 562.4 449 65.5
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 9.2e-158 560.8 437 67.7
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 2.7e-157 559.3 453 68.9
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 2.7e-157 559.3 451 65.9
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 3.5e-157 558.9 452 66.2
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 7.8e-157 557.8 427 68.6
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.0e-156 557.4 362 79.3
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.0e-156 557.4 449 64.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 1.3e-156 557.0 451 66.7
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.3e-156 556.2 380 75.8
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.3e-156 556.2 379 76.0
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.3e-156 556.2 379 76.0
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 2.3e-156 556.2 451 64.7
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 3.3e-155 552.4 452 63.9
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 1.2e-154 550.4 452 64.6
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.0e-152 543.1 446 65.7
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.1e-150 537.3 452 63.9
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.2e-149 533.9 446 63.9
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 8.6e-148 527.7 362 75.1
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.9e-147 526.6 341 76.0
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.4e-145 519.6 456 63.2
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.3e-143 513.8 399 67.4
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.5e-131 473.8 450 59.3
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.7e-127 460.3 308 75.3
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 5.4e-126 455.3 307 76.2
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 5.1e-124 448.7 311 73.3
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 3.7e-122 442.6 290 76.6
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 6.2e-122 441.8 455 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 9.9e-120 434.5 378 59.8
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 6.4e-119 431.8 278 78.4
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.1e-118 431.0 380 61.3
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.3e-116 424.1 432 56.2
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 8.7e-116 421.4 376 61.4
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 5.6e-115 418.7 376 57.7
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 5.8e-112 408.7 301 69.8
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.9e-111 406.4 282 73.0
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.2e-110 402.9 383 55.4
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.6e-106 390.6 445 54.2
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 1.8e-105 387.1 281 72.2
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 5.9e-104 382.1 364 57.1
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.5e-99 367.5 378 55.6
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.4e-97 360.1 323 59.8
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 5.3e-97 359.0 346 57.2
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 7.7e-96 355.1 380 53.2
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 1.0e-95 354.8 448 53.3
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.2e-95 353.6 361 53.2
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.7e-93 346.7 377 52.5
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 9.4e-86 321.6 368 51.1
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.4e-84 317.8 383 46.7
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 4.2e-78 296.2 448 46.7
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 8.6e-63 245.4 222 65.3
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.2e-53 214.9 150 74.0
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.1e-39 166.4 164 53.0
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.6e-35 152.5 115 65.2
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.3e-31 141.0 173 50.3
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.5e-30 138.3 82 76.8
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.2e-27 128.6 111 59.5
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.8e-27 126.3 171 42.1
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 7.8e-24 115.9 72 83.3
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-20 105.5 87 69.0
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.1e-16 91.3 102 50.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 8.1e-13 79.3 75 52.0
BolC4t27673H Brassica oleracea HOM05D005300 ORTHO05D006622 1.4e-12 78.6 145 40.7
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.4e-09 68.6 185 33.0
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.5e-08 63.9 54 64.8


User provided reference genes

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