Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 5.1e-226 787.3 380 100.0
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 7.2e-220 766.9 380 97.1
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 7.2e-220 766.9 380 97.4
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 1.6e-219 765.8 380 97.1
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 5.1e-218 760.8 380 96.1
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 5.1e-218 760.8 380 96.1
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 3.7e-216 754.6 380 96.1
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 2.4e-215 751.9 380 95.5
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 2.4e-215 751.9 380 95.5
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 2.4e-215 751.9 380 95.5
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 5.9e-214 747.3 380 95.0
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 7.9e-211 736.9 382 93.7
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 5.3e-207 724.2 382 92.4
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 9.1e-207 723.4 382 92.7
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.0e-206 722.2 382 92.1
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.0e-205 719.9 382 92.1
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 2.5e-196 688.7 412 83.5
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 6.1e-195 684.1 391 86.4
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.8e-192 675.2 361 92.2
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 2.9e-189 665.2 366 91.0
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 3.6e-187 658.3 376 88.3
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.7e-184 649.4 328 96.6
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 1.4e-183 646.4 380 78.7
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 3.1e-183 645.2 377 78.0
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 3.1e-183 645.2 375 79.7
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 4.1e-183 644.8 373 79.4
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 3.5e-182 641.7 379 78.4
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 1.0e-181 640.2 373 79.4
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 2.9e-181 638.6 380 78.9
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 5.0e-181 637.9 372 79.8
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 1.6e-179 632.9 375 78.4
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 4.7e-179 631.3 373 77.7
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 3.0e-178 628.6 335 91.3
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 5.2e-178 627.9 373 76.4
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 5.2e-178 627.9 373 78.8
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 1.2e-177 626.7 375 77.9
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 1.5e-177 626.3 372 76.6
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 1.5e-177 626.3 373 77.2
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 3.4e-177 625.2 373 75.9
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 5.8e-177 624.4 373 77.2
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 4.9e-176 621.3 372 83.6
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 1.4e-175 619.8 375 79.7
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 3.2e-175 618.6 373 77.5
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.6e-174 616.3 373 77.2
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 7.8e-174 614.0 377 75.3
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 3.9e-173 611.7 368 76.6
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 5.0e-173 611.3 373 76.4
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 8.6e-173 610.5 382 75.4
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 1.1e-172 610.1 378 74.1
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 1.5e-172 609.8 369 76.4
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 8.0e-171 604.0 372 75.8
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.8e-170 602.8 378 74.1
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 1.5e-169 599.7 379 75.7
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 1.5e-169 599.7 379 73.9
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.5e-169 599.7 372 73.9
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 5.8e-169 597.8 370 73.8
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 9.8e-169 597.0 377 72.1
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 1.3e-168 596.7 372 73.7
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 2.9e-168 595.5 377 74.0
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 6.4e-168 594.3 373 73.2
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 3.2e-167 592.0 373 75.3
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 7.0e-167 590.9 369 74.8
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 1.6e-166 589.7 341 79.8
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 4.6e-166 588.2 382 73.0
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 6.0e-166 587.8 414 67.6
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 1.3e-165 586.6 370 73.0
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 3.0e-165 585.5 380 73.2
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 1.5e-164 583.2 393 72.0
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 1.6e-163 579.7 370 71.1
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 1.1e-162 577.0 375 72.0
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.1e-159 567.0 369 71.8
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 3.2e-159 565.5 378 71.4
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 9.2e-159 563.9 375 70.1
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 6.0e-158 561.2 335 78.2
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 2.3e-157 559.3 373 70.8
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 5.1e-157 558.1 350 74.9
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 9.5e-156 553.9 370 70.5
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 2.8e-155 552.4 374 70.3
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 2.4e-154 549.3 335 76.4
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 4.0e-154 548.5 368 69.6
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 3.4e-153 545.4 369 71.3
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 3.4e-153 545.4 328 77.7
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 2.4e-151 539.3 382 68.1
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.4e-151 539.3 377 68.7
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 7.1e-151 537.7 377 67.9
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 6.0e-150 534.6 373 68.1
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 3.9e-149 531.9 373 68.1
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.6e-147 526.6 373 67.3
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 4.7e-147 525.0 373 67.0
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 4.0e-146 521.9 375 67.2
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 2.6e-145 519.2 375 66.9
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 3.4e-145 518.8 380 65.5
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 2.9e-144 515.8 370 65.9
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 4.9e-144 515.0 281 82.9
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 1.1e-143 513.8 368 65.8
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 1.2e-142 510.4 375 65.6
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 3.5e-142 508.8 374 65.2
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 3.5e-142 508.8 375 65.9
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 6.0e-142 508.1 375 65.9
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 3.0e-141 505.8 375 65.1
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 7.3e-140 501.1 375 64.5
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 1.1e-138 497.3 375 64.0
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 1.8e-138 496.5 375 64.8
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 1.8e-138 496.5 375 64.8
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 5.3e-138 495.0 375 62.9
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 4.5e-137 491.9 253 88.5
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 6.4e-136 488.0 349 69.6
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 2.4e-135 486.1 379 59.9
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 1.0e-133 480.7 377 61.5
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.3e-133 480.3 383 67.4
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.5e-129 466.8 375 61.1
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 3.2e-127 459.1 257 81.3
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.3e-125 453.8 366 59.8
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 7.4e-124 448.0 373 60.9
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.3e-123 447.2 387 54.5
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 4.0e-122 442.2 253 77.9
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 5.5e-119 431.8 281 72.2
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 5.5e-119 431.8 387 52.7
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.8e-117 426.8 386 53.4
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 8.2e-115 417.9 382 52.9
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 4.8e-107 392.1 306 64.7
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 4.7e-102 375.6 224 76.3
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 5.5e-95 352.1 309 56.6
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 7.0e-82 308.5 527 36.1
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.5e-79 300.8 160 88.8
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.3e-77 293.5 144 94.4
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 3.3e-71 273.1 218 62.4
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 1.6e-70 270.8 213 63.8
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 1.5e-68 264.2 218 61.5
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.8e-66 257.3 271 50.2
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 8.6e-64 248.4 370 38.1
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 5.6e-55 219.2 134 73.1
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 4.7e-54 216.1 146 69.9
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 6.2e-54 215.7 144 69.4
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 9.9e-44 181.8 112 71.4
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.7e-40 171.0 139 58.3
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 8.6e-40 168.7 297 32.3
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 8.4e-35 152.1 92 73.9
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.4e-29 134.8 281 29.5
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 9.3e-26 122.1 146 47.9
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 1.1e-23 115.2 57 87.7
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 3.6e-22 110.2 52 92.3
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 6.2e-22 109.4 59 83.1
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 4.0e-21 106.7 66 72.7
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 9.6e-15 85.5 57 75.4
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 8.1e-14 82.4 78 53.8
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 4.5e-12 76.6 48 77.1
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 9.6e-07 58.9 37 67.6


User provided reference genes

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