Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 1.2e-166 589.7 301 100.0
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 1.0e-152 543.5 301 92.0
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 3.6e-150 535.0 301 89.7
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 4.7e-150 534.6 305 88.9
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 6.2e-150 534.3 301 90.0
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 1.4e-149 533.1 301 89.7
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 2.4e-149 532.3 301 88.7
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 3.1e-149 531.9 304 88.5
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 4.9e-147 524.6 301 88.4
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 1.6e-145 519.6 305 87.2
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 2.3e-144 515.8 296 89.2
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 4.8e-142 508.1 302 85.1
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 6.2e-142 507.7 300 86.7
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 3.4e-140 501.9 296 87.2
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 5.1e-136 488.0 308 80.2
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 1.9e-119 433.0 295 74.2
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 4.8e-118 428.3 300 71.7
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.1e-117 427.2 289 74.4
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 5.3e-117 424.9 292 74.3
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.3e-115 420.2 299 70.6
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 1.4e-114 416.8 291 71.5
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.4e-114 416.8 301 72.1
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 2.5e-114 416.0 299 70.6
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 5.5e-114 414.8 301 71.4
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 7.2e-114 414.5 313 69.0
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 9.3e-114 414.1 293 69.3
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.6e-113 413.3 299 69.9
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 2.1e-113 412.9 294 73.1
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 2.7e-113 412.5 295 70.8
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 2.7e-113 412.5 294 70.1
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 3.6e-113 412.1 304 69.1
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 3.6e-113 412.1 300 70.0
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 4.6e-113 411.8 299 69.9
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 6.1e-113 411.4 333 67.0
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 6.1e-113 411.4 290 72.8
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.3e-112 409.5 299 69.2
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.3e-112 409.5 299 69.2
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 3.9e-112 408.7 288 71.9
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 5.1e-112 408.3 295 70.8
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 6.7e-112 407.9 295 69.8
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.9e-111 406.4 289 72.0
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 1.9e-111 406.4 290 72.4
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 3.3e-111 405.6 293 68.3
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 4.3e-111 405.2 299 68.9
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 5.7e-111 404.8 289 70.9
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 5.7e-111 404.8 301 68.8
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 9.7e-111 404.1 293 70.0
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.7e-110 403.3 301 68.1
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 2.8e-110 402.5 299 68.2
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 8.2e-110 401.0 299 67.9
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 2.4e-109 399.4 294 68.4
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 4.1e-109 398.7 290 70.0
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 5.3e-109 398.3 302 68.5
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 6.9e-109 397.9 307 65.1
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 9.1e-109 397.5 303 69.3
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 2.0e-108 396.4 293 67.9
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 2.0e-108 396.4 290 70.0
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 4.5e-108 395.2 307 67.1
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 1.0e-107 394.0 293 67.6
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 6.5e-107 391.3 290 67.6
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 1.1e-106 390.6 329 64.4
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.1e-106 390.6 303 68.0
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 3.2e-106 389.0 295 68.5
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 7.2e-106 387.9 300 66.3
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 9.4e-106 387.5 294 66.7
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.2e-105 387.1 301 67.4
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 2.7e-105 386.0 289 69.9
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 2.3e-104 382.9 292 66.1
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.5e-103 380.2 285 67.0
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 3.3e-103 379.0 290 66.2
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 4.4e-103 378.6 294 64.3
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 1.3e-102 377.1 293 64.8
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 2.2e-102 376.3 300 67.0
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 6.3e-102 374.8 290 64.5
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 8.2e-102 374.4 281 67.3
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 3.4e-100 369.0 299 64.2
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 1.0e-99 367.5 299 63.9
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 1.0e-99 367.5 301 63.8
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 4.2e-98 362.1 293 65.5
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 9.4e-98 360.9 284 66.5
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 2.7e-97 359.4 300 64.0
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 3.6e-97 359.0 296 63.5
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 4.7e-97 358.6 280 65.0
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 2.3e-96 356.3 293 63.1
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 3.9e-96 355.5 314 61.1
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 5.2e-96 355.1 281 65.5
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 2.6e-95 352.8 287 66.2
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 3.3e-95 352.4 312 61.5
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 5.7e-95 351.7 289 62.3
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 7.4e-95 351.3 308 59.1
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 7.4e-95 351.3 289 61.9
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 9.1e-93 344.4 300 60.7
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 3.5e-92 342.4 296 61.5
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.2e-89 334.0 319 57.7
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 8.8e-88 327.8 293 56.0
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 2.6e-87 326.2 273 59.0
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 9.7e-87 324.3 274 60.9
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 4.8e-86 322.0 337 55.8
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.2e-84 317.4 308 56.8
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 1.3e-83 313.9 311 53.7
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.4e-80 303.9 375 48.0
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 1.3e-75 287.3 240 65.4
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 9.2e-69 264.6 301 47.5
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 1.6e-65 253.8 197 66.5
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.6e-65 253.8 195 65.6
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.8e-65 253.1 193 68.9
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 4.9e-62 242.3 312 45.5
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 3.3e-58 229.6 297 45.8
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 3.6e-57 226.1 149 73.2
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 5.8e-55 218.8 172 67.4
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 3.7e-54 216.1 332 40.4
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 4.1e-53 212.6 206 55.8
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 1.8e-48 197.2 200 59.0
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 2.7e-36 156.8 81 93.8
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 2.7e-36 156.8 81 93.8
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 7.8e-36 155.2 97 79.4
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 1.5e-26 124.4 357 28.0
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.9e-26 124.0 91 65.9
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 5.6e-26 122.5 285 32.3
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 7.3e-26 122.1 90 65.6
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 6.2e-25 119.0 352 29.5
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 1.6e-20 104.4 65 76.9
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 2.1e-20 104.0 113 55.8
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 9.9e-15 85.1 52 76.9
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 1.7e-14 84.3 57 73.7
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 2.9e-14 83.6 91 50.5
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 6.4e-14 82.4 83 59.0
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 1.4e-13 81.3 83 57.8
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 1.4e-13 81.3 83 57.8
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 9.3e-13 78.6 80 58.8
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 6.0e-12 75.9 283 24.7
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 3.9e-11 73.2 43 76.7
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 4.0e-08 63.2 64 56.2
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 2.6e-07 60.5 48 68.8


User provided reference genes

Program Settings