Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g19410 Schrenkiella parvula HOM05D005962 ORTHO05D007325 2.0e-155 552.4 276 100.0
AL3G35400 Arabidopsis lyrata HOM05D005962 ORTHO05D007325 5.0e-130 468.0 258 88.4
CARHR097270 Cardamine hirsuta HOM05D005962 ORTHO05D007325 2.5e-129 465.7 259 88.8
BcaB06g26231 Brassica carinata HOM05D005962 ORTHO05D007325 5.5e-129 464.5 259 89.6
Aa31LG8G8050 Aethionema arabicum HOM05D005962 ORTHO05D007325 1.2e-128 463.4 258 87.6
C05p42110 Brassica napus HOM05D005962 ORTHO05D007325 3.0e-127 458.8 259 89.2
BcaC05g28175 Brassica carinata HOM05D005962 ORTHO05D007325 1.2e-126 456.8 259 88.8
Carub.0003s2138 Capsella rubella HOM05D005962 ORTHO05D007325 2.0e-126 456.1 258 86.4
Thhalv10021373m.g Eutrema salsugineum HOM05D005962 ORTHO05D007325 3.4e-126 455.3 258 87.6
AT3G21350 Arabidopsis thaliana HOM05D005962 ORTHO05D007325 5.7e-126 454.5 258 86.0
A05p27250 Brassica napus HOM05D005962 ORTHO05D007325 7.5e-126 454.1 259 88.4
BraA05t21615Z Brassica rapa HOM05D005962 ORTHO05D007325 3.1e-124 448.7 269 85.5
BolC5t32941H Brassica oleracea HOM05D005962 ORTHO05D007325 1.1e-121 440.3 296 78.0
THA.LOC104805924 Tarenaya hassleriana HOM05D005962 ORTHO05D007325 2.8e-112 409.1 252 80.6
Rhsim08G0229500 Rhododendron simsii HOM05D005962 ORTHO05D007325 8.9e-95 350.9 249 69.5
Sabra17G0126400 Salix brachista HOM05D005962 ORTHO05D007325 8.9e-95 350.9 236 73.3
vmacro18833 Vaccinium macrocarpon HOM05D005962 ORTHO05D007325 1.2e-94 350.5 251 70.1
TAR623G1297 Trochodendron aralioides HOM05D005962 ORTHO05D007325 9.9e-94 347.4 249 70.3
Haze_15888 Corylus avellana HOM05D005962 ORTHO05D007325 6.4e-93 344.7 237 71.3
Prupe.3G054900 Prunus persica HOM05D005962 ORTHO05D007325 1.4e-92 343.6 242 71.1
Thecc.06G103400 Theobroma cacao HOM05D005962 ORTHO05D007325 2.4e-92 342.8 235 71.9
Oeu024256.1 Olea europaea HOM05D005962 ORTHO05D007325 3.2e-92 342.4 245 68.6
Sed0025844 Sechium edule HOM05D005962 ORTHO05D007325 1.6e-91 340.1 241 71.4
CsaV3_3G023410 Cucumis sativus L. HOM05D005962 ORTHO05D007325 2.7e-91 339.3 231 72.7
CiPaw.02G144100 Carya illinoinensis HOM05D005962 ORTHO05D007325 3.5e-91 339.0 230 73.0
COL.COLO4_30547 Corchorus olitorius HOM05D005962 ORTHO05D007325 6.0e-91 338.2 245 69.0
DCAR_007600 Daucus carota HOM05D005962 ORTHO05D007325 6.0e-91 338.2 252 66.3
Rhsim08G0229700 Rhododendron simsii HOM05D005962 ORTHO05D007325 6.0e-91 338.2 264 65.5
Manes.04G136400 Manihot esculenta HOM05D005962 ORTHO05D007325 7.8e-91 337.8 245 70.2
Gohir.D01G215700 Gossypium hirsutum HOM05D005962 ORTHO05D007325 3.0e-90 335.9 244 68.4
GSVIVG01016927001 Vitis vinifera HOM05D005962 ORTHO05D007325 5.1e-90 335.1 227 73.1
Cc00_g23930 Coffea canephora HOM05D005962 ORTHO05D007325 1.5e-89 333.6 253 66.8
Gohir.D10G065400 Gossypium hirsutum HOM05D005962 ORTHO05D007325 1.5e-89 333.6 243 67.9
Manes.11G030300 Manihot esculenta HOM05D005962 ORTHO05D007325 1.5e-89 333.6 247 67.2
ClCG07G013490 Citrullus lanatus HOM05D005962 ORTHO05D007325 1.9e-89 333.2 232 71.6
PGSC0003DMG401002516 Solanum tuberosum HOM05D005962 ORTHO05D007325 1.9e-89 333.2 242 67.4
Actinidia32123 Actinidia chinensis HOM05D005962 ORTHO05D007325 2.5e-89 332.8 254 66.1
Eucgr.J02602 Eucalyptus grandis HOM05D005962 ORTHO05D007325 2.5e-89 332.8 250 68.0
Gohir.A10G063800 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.5e-89 332.8 243 67.1
Solyc12g044640.2 Solanum lycopersicum HOM05D005962 ORTHO05D007325 3.3e-89 332.4 235 69.8
MSTRG.11013 Avicennia marina HOM05D005962 ORTHO05D007325 5.6e-89 331.6 240 69.2
CANSAT21G1984 Cannabis sativa HOM05D005962 ORTHO05D007325 5.6e-89 331.6 239 68.6
Ciclev10026335m.g Citrus clementina HOM05D005962 ORTHO05D007325 5.6e-89 331.6 246 68.7
Psat4g195960 Pisum sativum HOM05D005962 ORTHO05D007325 5.6e-89 331.6 236 69.5
Gorai.011G069400 Gossypium raimondii HOM05D005962 ORTHO05D007325 9.5e-89 330.9 233 69.5
PGR102G2175 Punica granatum HOM05D005962 ORTHO05D007325 9.5e-89 330.9 231 68.4
Gorai.002G261900 Gossypium raimondii HOM05D005962 ORTHO05D007325 1.6e-88 330.1 244 67.6
HPP92_007682 Vanilla planifolia HOM05D005962 ORTHO05D007325 1.6e-88 330.1 250 66.0
CAN.G1143.30 Capsicum annuum HOM05D005962 ORTHO05D007325 2.1e-88 329.7 233 69.1
Lj3g0005277 Lotus japonicus HOM05D005962 ORTHO05D007325 3.6e-88 328.9 243 68.7
Nn4g25123 Nelumbo nucifera HOM05D005962 ORTHO05D007325 3.6e-88 328.9 246 65.9
TWI12G1051 Tripterygium wilfordii HOM05D005962 ORTHO05D007325 3.6e-88 328.9 245 66.1
Duzib192G0276 Durio zibethinus HOM05D005962 ORTHO05D007325 4.7e-88 328.6 244 66.8
Phvul.010G143300 Phaseolus vulgaris HOM05D005962 ORTHO05D007325 4.7e-88 328.6 247 67.6
CSS0027495 Camellia sinensis var. sinensis HOM05D005962 ORTHO05D007325 8.1e-88 327.8 225 71.1
Aqoxy2G04031 Aquilegia oxysepala HOM05D005962 ORTHO05D007325 1.4e-87 327.0 230 69.1
Glyma.08G199200 Glycine max HOM05D005962 ORTHO05D007325 1.8e-87 326.6 233 69.5
Lalb_Chr01g0013231 Lupinus albus HOM05D005962 ORTHO05D007325 1.8e-87 326.6 232 68.5
EL10Ac3g07358 Beta vulgaris HOM05D005962 ORTHO05D007325 2.4e-87 326.2 252 67.5
Migut.I00971 Erythranthe guttata HOM05D005962 ORTHO05D007325 2.4e-87 326.2 228 70.2
QL08p056642 Quercus lobata HOM05D005962 ORTHO05D007325 2.4e-87 326.2 251 67.3
Hma1.2p1_0764F.1_g214960 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 3.1e-87 325.9 252 68.3
VMungo0331G0822 Vigna mungo HOM05D005962 ORTHO05D007325 3.1e-87 325.9 240 69.2
MELO3C013015.2 Cucumis melo HOM05D005962 ORTHO05D007325 6.8e-87 324.7 259 64.9
Hma1.2p1_2308F.1_g319480 Hydrangea macrophylla HOM05D005962 ORTHO05D007325 6.8e-87 324.7 252 68.3
Peaxi162Scf00038g01151 Petunia axillaris HOM05D005962 ORTHO05D007325 2.0e-86 323.2 242 66.1
Sopen03g040020 Solanum pennellii HOM05D005962 ORTHO05D007325 2.6e-86 322.8 242 65.3
AUR62020986 Chenopodium quinoa HOM05D005962 ORTHO05D007325 3.4e-86 322.4 252 65.9
Medtr8g015230 Medicago truncatula HOM05D005962 ORTHO05D007325 3.4e-86 322.4 236 67.8
Nitab4.5_0002423g0030 Nicotiana tabacum HOM05D005962 ORTHO05D007325 4.4e-86 322.0 234 69.2
Atru.chr12.732 Acer truncatum HOM05D005962 ORTHO05D007325 7.6e-86 321.2 236 68.6
SalBow6G5073 Salvia bowleyana HOM05D005962 ORTHO05D007325 7.6e-86 321.2 227 68.3
PGSC0003DMG400026839 Solanum tuberosum HOM05D005962 ORTHO05D007325 7.6e-86 321.2 235 68.5
Os06g0217500 Oryza sativa ssp. japonica HOM05D005962 ORTHO05D007325 1.7e-85 320.1 234 67.1
ECA248G1573 Erigeron canadensis HOM05D005962 ORTHO05D007325 2.2e-85 319.7 238 66.8
MBI01_g35895_MAGBIO Magnolia biondii HOM05D005962 ORTHO05D007325 2.2e-85 319.7 252 65.5
arahy.Tifrunner.gnm1.ann1.FEFU12 Arachis hypogaea HOM05D005962 ORTHO05D007325 2.9e-85 319.3 230 69.6
Sopen12g023060 Solanum pennellii HOM05D005962 ORTHO05D007325 3.8e-85 318.9 235 68.1
AUR62018448 Chenopodium quinoa HOM05D005962 ORTHO05D007325 4.9e-85 318.5 237 68.4
Sc19g0007830 Simmondsia chinensis HOM05D005962 ORTHO05D007325 8.4e-85 317.8 239 65.7
Lsat_1_v5_gn_5_181040 Lactuca sativa HOM05D005962 ORTHO05D007325 2.4e-84 316.2 236 67.8
arahy.Tifrunner.gnm1.ann1.M52QXX Arachis hypogaea HOM05D005962 ORTHO05D007325 3.2e-84 315.8 230 69.1
PSO210G7608 Papaver somniferum HOM05D005962 ORTHO05D007325 1.2e-83 313.9 243 63.0
PSO210G0258 Papaver somniferum HOM05D005962 ORTHO05D007325 2.1e-83 313.2 243 62.6
Nitab4.5_0001172g0180 Nicotiana tabacum HOM05D005962 ORTHO05D007325 3.9e-82 308.9 236 66.9
unitig_32.g10986 Utricularia gibba HOM05D005962 ORTHO05D007325 6.6e-82 308.1 236 64.8
Ca_23283_v3 Cicer arietinum L. HOM05D005962 ORTHO05D007325 8.7e-82 307.8 240 67.5
FvH4_6g32730 Fragaria vesca HOM05D005962 ORTHO05D007325 8.7e-82 307.8 234 65.4
Dinv37956 Davidia involucrata HOM05D005962 ORTHO05D007325 1.9e-81 306.6 212 72.6
SHI11207 Sapria himalayana HOM05D005962 ORTHO05D007325 2.5e-81 306.2 266 59.8
RcHm_v2.0_Chr2g0141751 Rosa chinensis HOM05D005962 ORTHO05D007325 1.2e-80 303.9 234 64.1
Zm00001eb372970 Zea mays HOM05D005962 ORTHO05D007325 1.2e-80 303.9 232 63.4
FAN05G1114 Fragaria x ananassa HOM05D005962 ORTHO05D007325 4.7e-80 302.0 234 64.5
Solyc03g121210.4 Solanum lycopersicum HOM05D005962 ORTHO05D007325 6.2e-80 301.6 205 69.3
FAN02G1749 Fragaria x ananassa HOM05D005962 ORTHO05D007325 1.8e-79 300.1 234 63.7
FAN09G1055 Fragaria x ananassa HOM05D005962 ORTHO05D007325 2.6e-78 296.2 243 61.3
HanXRQChr15g0489361 Helianthus annuus HOM05D005962 ORTHO05D007325 4.2e-76 288.9 245 62.4
SGA_v2.0_scaffold45G16998 Striga asiatica HOM05D005962 ORTHO05D007325 1.5e-73 280.4 192 69.8
Gohir.A01G226000 Gossypium hirsutum HOM05D005962 ORTHO05D007325 2.0e-70 270.0 190 69.5
Cpa.g.sc131.1 Carica papaya HOM05D005962 ORTHO05D007325 4.0e-63 245.7 151 76.2
Ah.04g150140 Amaranthus hybridus HOM05D005962 ORTHO05D007325 2.0e-62 243.4 157 72.6
ATR0705G221 Amborella trichopoda HOM05D005962 ORTHO05D007325 7.6e-62 241.5 148 76.4
Migut.I00969 Erythranthe guttata HOM05D005962 ORTHO05D007325 7.6e-62 241.5 140 79.3
Migut.O00801 Erythranthe guttata HOM05D005962 ORTHO05D007325 9.9e-62 241.1 137 80.3
Mapoly0012s0176 Marchantia polymorpha HOM05D005962 ORTHO05D007325 3.2e-60 236.1 254 50.0
Pp3c11_22580 Physcomitrium patens HOM05D005962 ORTHO05D007325 3.2e-60 236.1 242 52.1
AagrBONN_evm.TU.Sc2ySwM_362.1658 Anthoceros agrestis HOM05D005962 ORTHO05D007325 1.6e-59 233.8 187 61.0
TPR.G39766 Trifolium pratense HOM05D005962 ORTHO05D007325 1.6e-59 233.8 184 64.7
Cfa019373 Carpinus fangiana HOM05D005962 ORTHO05D007325 6.2e-56 221.9 171 66.1
SMO143G0120 Selaginella moellendorffii HOM05D005962 ORTHO05D007325 1.0e-53 214.5 189 59.8
Lj5A50T68 Lonicera japonica HOM05D005962 ORTHO05D007325 1.9e-52 210.3 172 62.8
MD14G1079700 Malus domestica HOM05D005962 ORTHO05D007325 8.7e-50 201.4 169 62.7
CBR_g22489 Chara braunii HOM05D005962 ORTHO05D007325 6.1e-43 178.7 229 45.4
Medtr0361s0030 Medicago truncatula HOM05D005962 ORTHO05D007325 7.7e-30 135.2 103 63.1
QL05p018100 Quercus lobata HOM05D005962 ORTHO05D007325 6.1e-27 125.6 92 67.4
SEGI_18792 Sequoiadendron giganteum HOM05D005962 ORTHO05D007325 3.9e-26 122.9 78 69.2
Lj5C50T14 Lonicera japonica HOM05D005962 ORTHO05D007325 6.7e-26 122.1 74 77.0
Cfa019374 Carpinus fangiana HOM05D005962 ORTHO05D007325 1.4e-23 114.4 58 84.5
Lj3g0016976 Lotus japonicus HOM05D005962 ORTHO05D007325 4.5e-22 109.4 186 42.5
Dinv30416 Davidia involucrata HOM05D005962 ORTHO05D007325 1.0e-21 108.2 228 36.0
Lsat_1_v5_gn_2_99820 Lactuca sativa HOM05D005962 ORTHO05D007325 2.9e-21 106.7 75 70.7
RcHm_v2.0_Chr5g0064381 Rosa chinensis HOM05D005962 ORTHO05D007325 4.7e-19 99.4 85 55.3
PRCOL_00006676 Prasinoderma coloniale HOM05D001184 ORTHO05D008450 8.0e-19 98.6 133 39.1
BraA09t39590Z Brassica rapa HOM05D002393 ORTHO05D002845 6.7e-18 95.5 66 75.8
Ah.04g150130 Amaranthus hybridus HOM05D000535 ORTHO05D000427 1.5e-17 94.4 90 57.8
TAR623G1541 Trochodendron aralioides HOM05D005962 ORTHO05D007325 9.7e-17 91.7 58 70.7
Nitab4.5_0008212g0010 Nicotiana tabacum HOM05D005962 ORTHO05D007325 1.1e-15 88.2 203 35.5
C09p14660 Brassica napus HOM05D017738 ORTHO05D042708 3.1e-15 86.7 96 53.1
BolC9t54371H Brassica oleracea HOM05D017738 ORTHO05D042708 3.1e-15 86.7 96 53.1
TAR624G0741 Trochodendron aralioides HOM05D005962 ORTHO05D007325 9.1e-15 85.1 145 41.4
Pp3c7_2870 Physcomitrium patens HOM05D005962 ORTHO05D007325 2.2e-13 80.5 258 28.7
Zm00001eb084330 Zea mays HOM05D005962 ORTHO05D007325 2.9e-13 80.1 57 61.4
Zm00001eb192830 Zea mays HOM05D005962 ORTHO05D007325 1.9e-12 77.4 58 56.9
TAR636G3265 Trochodendron aralioides HOM05D005962 ORTHO05D007325 7.2e-12 75.5 43 74.4
Cpa.g.c26718.1 Carica papaya HOM05D005962 ORTHO05D007325 1.4e-07 61.2 54 61.1
Dinv30417 Davidia involucrata HOM05D000106 ORTHO05D000160 5.4e-07 59.3 54 55.6
BolC4t22784H Brassica oleracea HOM05D017738 ORTHO05D024470 1.6e-06 57.8 66 51.5
BolC3t18344H Brassica oleracea HOM05D017738 ORTHO05D024470 3.5e-06 56.6 38 76.3


User provided reference genes

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