Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 9.4e-96 353.6 188 100.0
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 1.1e-91 340.1 188 95.7
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 2.2e-89 332.4 188 94.1
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.9e-89 332.0 189 94.2
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 2.9e-89 332.0 189 94.2
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.9e-89 332.0 189 94.2
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 3.8e-89 331.6 188 93.1
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 1.1e-88 330.1 188 93.1
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 1.1e-88 330.1 189 93.7
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 1.6e-87 326.2 188 90.4
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 6.1e-87 324.3 190 93.2
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 6.1e-87 324.3 190 93.2
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 1.4e-86 323.2 190 92.1
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-75 287.0 189 85.7
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 5.5e-72 274.6 191 80.6
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 3.0e-70 268.9 189 82.5
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 3.0e-70 268.9 189 82.5
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 2.0e-69 266.2 188 81.9
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 7.5e-69 264.2 192 81.2
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 2.8e-68 262.3 187 75.4
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 4.8e-68 261.5 191 73.8
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-67 260.4 198 73.2
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 2.4e-67 259.2 188 75.5
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 3.1e-67 258.8 196 74.0
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 7.0e-67 257.7 188 75.5
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 7.0e-67 257.7 188 76.1
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 9.1e-67 257.3 188 76.1
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.2e-66 256.9 188 75.5
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 1.2e-66 256.9 188 73.9
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 3.8e-65 251.9 195 72.8
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 8.6e-65 250.8 190 75.8
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 1.1e-64 250.4 190 72.6
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 1.9e-64 249.6 191 70.2
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 2.5e-64 249.2 193 72.0
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 7.2e-64 247.7 198 71.7
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 7.2e-64 247.7 195 71.8
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 7.2e-64 247.7 195 71.8
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 1.2e-63 246.9 190 73.7
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 1.2e-63 246.9 191 72.8
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 2.1e-63 246.1 191 71.7
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 2.1e-63 246.1 190 69.5
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 3.6e-63 245.4 187 70.6
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 8.0e-63 244.2 192 72.4
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.0e-62 243.8 191 70.2
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.0e-62 243.8 190 69.5
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.0e-62 243.8 191 72.3
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.0e-62 243.8 191 71.2
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.8e-62 243.0 189 69.8
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 2.3e-62 242.7 191 72.3
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.3e-62 242.7 190 68.9
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 2.3e-62 242.7 190 72.1
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 3.0e-62 242.3 190 74.2
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 3.0e-62 242.3 191 71.2
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.0e-62 242.3 191 71.2
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.0e-62 242.3 191 71.2
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 3.0e-62 242.3 195 67.7
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 5.2e-62 241.5 191 70.2
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.8e-62 240.7 189 69.3
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 8.8e-62 240.7 186 72.6
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 8.8e-62 240.7 191 71.2
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.2e-61 240.4 191 71.7
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 1.5e-61 240.0 217 62.2
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.0e-61 239.6 191 71.7
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 2.6e-61 239.2 192 72.9
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 2.6e-61 239.2 191 71.7
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 3.4e-61 238.8 192 70.3
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 3.4e-61 238.8 195 68.7
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.4e-61 238.4 192 70.3
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 4.4e-61 238.4 191 69.6
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 4.4e-61 238.4 191 70.2
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 9.8e-61 237.3 188 68.1
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.3e-60 236.9 188 68.6
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.3e-60 236.9 192 69.8
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.7e-60 236.5 190 68.9
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.2e-60 236.1 192 67.2
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 3.7e-60 235.3 195 66.7
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 4.9e-60 235.0 229 61.1
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 6.3e-60 234.6 161 78.3
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 8.3e-60 234.2 184 71.2
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.1e-59 233.8 176 74.4
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.8e-59 233.0 191 67.0
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 2.4e-59 232.6 167 76.0
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 3.1e-59 232.3 191 68.6
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 3.1e-59 232.3 190 67.4
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 3.1e-59 232.3 190 67.9
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 7.0e-59 231.1 190 68.9
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 9.2e-59 230.7 189 67.2
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 9.2e-59 230.7 162 76.5
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.6e-58 229.9 186 68.3
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 2.0e-58 229.6 191 66.0
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 3.5e-58 228.8 178 69.7
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 4.5e-58 228.4 199 68.3
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 5.9e-58 228.0 186 67.7
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.7e-57 226.5 192 66.7
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 1.7e-57 226.5 162 74.7
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 2.3e-57 226.1 185 70.8
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 2.9e-57 225.7 190 66.8
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.8e-57 225.3 207 65.2
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.9e-56 223.0 183 68.3
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 1.9e-56 223.0 171 74.3
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 4.3e-56 221.9 187 66.8
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 7.3e-56 221.1 187 66.8
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.2e-55 220.3 161 75.2
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.6e-55 219.9 175 71.4
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 2.8e-55 219.2 152 78.3
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 4.7e-55 218.4 174 70.1
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 4.7e-55 218.4 161 71.4
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 6.1e-55 218.0 126 88.1
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 8.0e-55 217.6 192 66.1
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 1.0e-54 217.2 183 66.7
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 1.8e-54 216.5 219 58.0
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 1.8e-54 216.5 193 63.2
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.3e-54 216.1 172 70.3
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 2.3e-54 216.1 188 64.9
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 3.0e-54 215.7 189 62.4
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 1.2e-53 213.8 158 71.5
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 1.2e-53 213.8 127 85.0
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 2.0e-53 213.0 191 62.8
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 2.0e-53 213.0 171 67.8
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 2.6e-53 212.6 193 64.8
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 4.4e-53 211.8 125 85.6
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 4.4e-53 211.8 125 87.2
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 5.7e-53 211.5 155 73.5
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 9.8e-53 210.7 127 81.9
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 3.7e-52 208.8 153 73.2
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 6.4e-52 208.0 153 73.2
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 8.3e-52 207.6 153 73.2
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.2e-50 203.8 132 77.3
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 4.6e-50 201.8 166 67.5
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.0e-49 200.7 135 73.3
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 3.9e-49 198.7 174 62.1
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 5.0e-49 198.4 135 73.3
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 4.3e-48 195.3 195 58.5
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 1.6e-47 193.4 192 62.0
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 6.2e-47 191.4 145 73.1
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 1.1e-46 190.7 157 68.2
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 1.4e-46 190.3 157 68.2
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.1e-46 189.1 172 60.5
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.2e-46 188.3 160 67.5
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 7.5e-45 184.5 191 61.8
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 4.9e-44 181.8 152 69.7
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 2.7e-42 176.0 155 65.2
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 4.6e-42 175.3 190 55.8
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.6e-39 166.8 97 92.8
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.1e-39 166.4 145 60.0
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 2.8e-39 166.0 185 53.5
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 4.7e-39 165.2 124 65.3
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.1e-38 164.1 129 65.1
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 3.4e-37 159.1 167 55.7
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.3e-36 157.1 195 49.2
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 3.7e-36 155.6 142 63.4
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 1.4e-35 153.7 125 60.8
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.2e-34 150.6 136 59.6
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 2.1e-34 149.8 169 52.7
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 3.9e-33 145.6 162 51.9
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 3.9e-33 145.6 78 94.9
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 5.6e-32 141.7 177 46.9
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 7.3e-32 141.4 126 67.5
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.2e-31 140.6 126 67.5
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.5e-29 133.7 175 46.3
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.6e-29 132.9 142 56.3
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 7.8e-26 121.3 126 61.9
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 3.9e-25 119.0 69 85.5
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 4.3e-24 115.5 112 62.5
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.7e-23 112.1 113 61.9
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 6.2e-23 111.7 68 82.4
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.4e-22 109.8 68 80.9
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 1.5e-16 90.5 60 73.3
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.5e-16 89.7 57 75.4
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 3.3e-16 89.4 93 58.1
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 4.3e-16 89.0 77 62.3
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 5.6e-16 88.6 47 87.2
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 9.6e-16 87.8 87 52.9
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 3.6e-15 85.9 125 38.4
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 1.5e-08 63.9 45 68.9
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 5.6e-08 62.0 37 75.7
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 9.6e-08 61.2 37 75.7
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 6.2e-07 58.5 37 73.0
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 5.3e-06 55.5 31 83.9


User provided reference genes

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