Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 3.9e-87 324.7 157 100.0
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 4.2e-73 278.1 179 76.0
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 8.4e-66 253.8 177 72.3
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.1e-64 249.2 180 71.7
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 7.9e-64 247.3 180 71.7
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 4.8e-61 238.0 188 64.9
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 4.8e-61 238.0 188 64.9
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 1.1e-60 236.9 188 64.9
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 1.4e-60 236.5 180 68.9
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 2.4e-52 209.1 184 60.3
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 3.8e-50 201.8 180 58.3
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 3.2e-49 198.7 181 57.5
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 1.2e-48 196.8 181 54.7
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 3.6e-48 195.3 182 54.9
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 6.1e-48 194.5 181 55.8
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 6.1e-48 194.5 181 54.1
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 6.1e-48 194.5 180 55.6
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 3.0e-47 192.2 182 55.5
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 6.7e-47 191.0 180 56.1
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 8.8e-47 190.7 161 65.2
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.5e-46 189.9 186 54.8
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 2.6e-46 189.1 177 55.4
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 3.3e-46 188.7 180 55.0
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 2.8e-45 185.7 180 54.4
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 1.4e-44 183.3 181 51.4
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 3.1e-44 182.2 178 52.8
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 5.3e-44 181.4 179 52.0
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 6.9e-44 181.0 180 52.2
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 9.1e-44 180.6 180 52.2
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 1.2e-43 180.3 180 52.2
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.0e-43 179.5 180 53.3
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 2.0e-43 179.5 179 52.0
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 2.6e-43 179.1 180 51.1
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 2.6e-43 179.1 180 52.2
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 4.5e-43 178.3 180 52.8
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 4.5e-43 178.3 178 52.2
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 5.9e-43 177.9 184 51.1
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 5.9e-43 177.9 180 50.6
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 5.9e-43 177.9 180 51.7
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 7.7e-43 177.6 180 50.6
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.0e-42 177.2 180 50.6
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.0e-42 177.2 180 50.0
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 1.3e-42 176.8 183 50.8
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 2.2e-42 176.0 180 50.6
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 2.9e-42 175.6 180 50.6
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 2.9e-42 175.6 182 49.5
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 3.8e-42 175.3 182 50.5
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 5.0e-42 174.9 181 50.3
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 6.5e-42 174.5 180 50.6
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 6.5e-42 174.5 177 51.4
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.4e-41 173.3 180 50.6
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.4e-41 173.3 180 49.4
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 1.9e-41 172.9 182 50.0
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 2.5e-41 172.6 181 50.3
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 3.2e-41 172.2 183 49.7
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 3.2e-41 172.2 179 51.4
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 4.2e-41 171.8 182 50.0
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 4.2e-41 171.8 179 52.0
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 4.2e-41 171.8 180 51.1
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 4.2e-41 171.8 181 50.3
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.5e-41 171.4 179 52.0
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 5.5e-41 171.4 180 51.1
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 1.6e-40 169.9 178 49.4
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 2.1e-40 169.5 180 48.9
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 3.6e-40 168.7 180 47.8
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 4.7e-40 168.3 181 49.2
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 4.7e-40 168.3 180 49.4
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 6.1e-40 167.9 179 49.7
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 6.1e-40 167.9 177 49.7
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.0e-39 167.2 177 49.2
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.4e-39 166.8 177 49.7
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.8e-39 166.4 180 48.9
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.8e-39 166.4 179 50.8
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.8e-39 166.4 185 48.6
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.3e-39 166.0 182 47.8
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 3.0e-39 165.6 182 47.3
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 3.9e-39 165.2 180 46.7
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 6.7e-39 164.5 180 49.4
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 6.7e-39 164.5 180 48.3
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 6.7e-39 164.5 185 47.0
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 6.7e-39 164.5 179 49.7
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 1.1e-38 163.7 177 49.7
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.1e-38 163.7 181 49.2
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-38 163.3 176 52.8
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.5e-38 163.3 186 46.8
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.6e-38 162.5 181 47.5
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 2.6e-38 162.5 178 48.3
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 3.3e-38 162.2 186 47.3
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 4.4e-38 161.8 193 45.1
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 7.4e-38 161.0 181 47.5
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 9.7e-38 160.6 181 46.4
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.7e-37 159.8 180 46.7
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.7e-37 159.8 198 43.9
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 2.2e-37 159.5 180 48.9
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 2.8e-37 159.1 181 47.5
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 6.3e-37 157.9 179 45.3
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 2.4e-36 156.0 121 64.5
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 4.1e-36 155.2 178 45.5
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 1.2e-35 153.7 182 44.0
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.5e-35 152.1 183 44.8
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 3.5e-35 152.1 182 44.5
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 3.8e-34 148.7 182 44.0
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 6.5e-34 147.9 180 45.0
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 8.5e-34 147.5 164 49.4
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.5e-33 146.7 149 55.0
BcaC09g48593 Brassica carinata HOM05D001353 ORTHO05D005187 3.2e-33 145.6 88 76.1
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 9.4e-33 144.1 161 49.7
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 2.1e-32 142.9 161 49.7
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 6.1e-32 141.4 178 43.8
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 4.4e-30 135.2 181 42.0
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 7.5e-30 134.4 123 56.1
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 9.7e-30 134.0 174 41.4
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 1.3e-29 133.7 121 53.7
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.7e-29 133.3 177 41.8
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 3.7e-29 132.1 146 51.4
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 7.0e-28 127.9 164 43.9
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 9.1e-28 127.5 164 43.9
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 3.5e-27 125.6 105 59.0
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.5e-27 125.2 176 42.0
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 1.5e-25 120.2 165 42.4
CANSAT56G3175 Cannabis sativa HOM05D001353 ORTHO05D005187 7.2e-25 117.9 120 50.8
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 2.1e-24 116.3 159 44.0
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.6e-22 109.4 124 51.6
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 2.6e-22 109.4 158 41.1
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 2.8e-21 105.9 167 37.1
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.7e-21 105.5 155 41.3
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 9.1e-20 100.9 158 40.5
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 1.2e-19 100.5 93 58.1
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 3.5e-19 99.0 92 55.4
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.9e-17 93.2 117 45.3
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 1.5e-14 83.6 93 49.5
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.5e-14 83.6 93 46.2
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 4.4e-14 82.0 198 27.8
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 5.7e-14 81.6 94 48.9
SEGI_15304 Sequoiadendron giganteum HOM05D001353 ORTHO05D005187 1.0e-10 70.9 65 44.6
Medtr8g033020 Medicago truncatula HOM05D001353 ORTHO05D005187 1.9e-09 66.6 44 59.1
ATR0315G092 Amborella trichopoda HOM05D001353 ORTHO05D005187 6.1e-08 61.6 63 44.4


User provided reference genes

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