Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 0.0e+00 1371.3 700 100.0
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 0.0e+00 1269.6 701 93.0
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 0.0e+00 1266.9 702 93.0
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 0.0e+00 1265.4 711 92.1
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 0.0e+00 1250.3 704 91.9
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 0.0e+00 1250.0 692 92.8
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 0.0e+00 1243.0 716 88.7
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 0.0e+00 1241.9 697 92.3
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 0.0e+00 1225.7 716 88.3
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 0.0e+00 1224.9 671 92.7
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 0.0e+00 1205.7 716 87.0
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 0.0e+00 1132.9 761 79.2
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 0.0e+00 1097.4 718 79.7
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 5.4e-306 1053.9 623 87.6
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 9.3e-266 920.2 696 68.0
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 6.1e-265 917.5 729 64.6
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 1.3e-264 916.4 729 64.6
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 1.9e-263 912.5 697 66.9
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 8.5e-259 897.1 733 63.0
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 8.5e-259 897.1 691 65.3
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 4.2e-258 894.8 698 65.6
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.6e-257 892.9 692 65.5
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 1.6e-257 892.9 726 64.9
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 2.7e-257 892.1 689 68.7
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.0e-256 890.2 676 67.0
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 8.2e-254 880.6 716 64.8
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 6.9e-253 877.5 729 65.3
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 1.2e-252 876.7 693 66.1
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.9e-250 869.4 667 66.6
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 2.1e-249 865.9 719 63.7
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 6.1e-249 864.4 711 62.4
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 3.9e-248 861.7 703 62.6
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 1.5e-247 859.8 733 61.8
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 9.7e-247 857.1 731 61.6
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 1.1e-245 853.6 721 63.9
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 3.1e-245 852.0 717 64.3
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 2.0e-244 849.4 689 63.4
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 3.5e-244 848.6 682 64.1
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 6.5e-243 844.3 718 62.1
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 1.1e-242 843.6 725 62.3
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.6e-241 839.7 689 63.4
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 4.7e-241 838.2 694 63.4
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 4.7e-241 838.2 706 63.0
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 2.3e-240 835.9 695 62.6
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 3.7e-238 828.6 686 63.6
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.1e-237 825.1 697 62.3
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 3.5e-236 822.0 714 61.5
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.5e-236 821.6 697 62.1
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 4.5e-236 821.6 700 60.7
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 8.5e-235 817.4 709 59.5
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 1.1e-234 817.0 698 60.6
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.5e-234 816.6 723 60.0
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 4.4e-231 805.1 677 62.8
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 7.5e-231 804.3 689 61.7
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 3.1e-229 798.9 687 61.6
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 1.7e-227 793.1 687 59.8
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 6.5e-227 791.2 697 59.5
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 4.7e-225 785.0 662 61.9
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 6.8e-224 781.2 707 59.1
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 1.5e-223 780.0 697 59.1
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.3e-222 776.9 761 56.1
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 6.6e-219 764.6 685 59.3
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 9.5e-218 760.8 775 54.5
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.2e-217 760.4 730 57.8
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 3.6e-217 758.8 682 58.1
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 3.2e-213 745.7 729 57.1
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 1.3e-211 740.3 683 58.9
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 3.0e-211 739.2 532 69.4
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.1e-210 737.3 655 60.8
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 2.9e-206 722.6 595 63.5
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 2.3e-200 703.0 674 56.8
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 4.0e-200 702.2 727 55.7
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 1.5e-199 700.3 500 71.8
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 5.8e-199 698.4 575 62.8
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 9.8e-199 697.6 705 54.5
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 2.2e-198 696.4 579 62.5
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 6.8e-192 674.9 443 76.7
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.4e-189 666.4 696 53.2
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.5e-186 657.1 736 52.4
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 6.8e-184 648.3 493 66.7
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 5.8e-183 645.2 681 52.1
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.2e-182 643.3 555 61.3
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 3.8e-182 642.5 564 59.2
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 1.2e-180 637.5 697 49.4
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 2.3e-179 633.3 685 51.2
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 5.3e-176 622.1 735 51.2
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 8.7e-171 604.7 695 48.5
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.6e-156 557.4 691 44.9
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 2.1e-153 547.0 397 69.8
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 8.2e-153 545.0 477 60.8
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 6.5e-150 535.4 491 57.4
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 1.1e-138 498.0 409 62.1
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 5.2e-131 472.6 383 64.5
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 7.4e-130 468.8 349 67.9
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.6e-127 461.1 382 62.8
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.5e-125 453.8 381 61.7
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.3e-123 447.2 382 61.0
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 1.4e-120 438.0 796 38.2
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 1.7e-118 431.0 749 37.2
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 5.5e-117 426.0 361 60.1
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 9.8e-114 415.2 853 34.3
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.2e-110 404.1 680 37.6
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 9.8e-106 388.7 312 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.0e-94 350.5 348 53.7
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 1.5e-93 348.2 740 33.2
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 1.5e-90 338.2 312 57.7
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 2.9e-89 334.0 319 55.5
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.1e-71 274.6 289 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.1e-67 260.8 296 49.3
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.1e-67 260.8 206 65.5
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 1.2e-66 258.8 163 76.7
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 9.3e-64 249.2 645 30.2
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 4.6e-63 246.9 245 55.1
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 1.0e-62 245.7 174 71.3
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 8.1e-60 236.1 230 56.1
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 1.9e-56 224.9 217 54.8
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.7e-49 201.8 176 58.0
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.6e-47 195.3 263 45.2
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 8.7e-46 189.5 200 52.5
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 7.4e-45 186.4 167 56.9
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 5.3e-43 180.3 154 57.8
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 5.5e-32 143.7 130 56.9
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 9.4e-24 116.3 137 47.4
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 4.7e-23 114.0 145 43.4
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 6.7e-22 110.2 156 44.9
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 3.3e-21 107.8 141 47.5
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 3.3e-21 107.8 137 47.4
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 4.1e-19 100.9 128 44.5
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 4.7e-15 87.4 67 70.1
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 6.3e-12 77.0 51 68.6
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.4e-11 75.9 76 52.6
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 9.1e-11 73.2 81 53.1
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.5e-08 65.9 37 89.2


User provided reference genes

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