Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1718.4 915 100.0
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1647.1 916 95.6
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1642.9 915 94.1
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1630.5 915 94.0
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1624.4 915 93.1
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1620.5 924 92.5
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1620.5 913 94.1
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1616.3 917 93.0
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1544.6 917 90.9
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1524.2 910 89.0
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1432.2 810 93.1
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1432.2 810 93.1
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1407.5 909 82.7
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1285.8 842 77.7
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1279.2 890 73.4
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1263.4 876 75.7
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1262.7 843 76.2
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1262.3 876 75.1
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1261.9 835 76.0
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1255.7 876 75.8
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1255.0 832 78.5
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1253.8 906 74.7
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1252.3 840 78.2
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1247.3 859 75.1
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1245.0 912 74.1
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1244.6 880 72.0
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1243.4 899 73.5
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1243.0 912 73.8
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1242.6 896 73.7
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1242.3 896 73.4
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1241.5 897 73.0
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1241.1 838 75.7
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1239.6 835 75.4
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1239.6 896 73.3
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1237.6 901 71.5
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1236.5 837 75.7
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1234.6 904 72.7
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1231.1 906 73.8
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1227.2 845 75.4
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1226.5 855 72.4
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1226.1 919 72.7
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1226.1 921 72.6
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1224.5 897 73.0
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1223.8 880 72.7
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1222.6 910 73.2
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1221.8 906 69.8
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1221.5 899 71.5
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1220.3 912 72.4
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1220.3 899 71.4
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1219.9 853 75.6
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1217.2 877 71.2
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1215.7 907 70.3
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1215.3 905 72.4
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1215.3 832 76.0
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1210.7 899 71.9
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1210.3 904 69.9
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1209.9 899 71.0
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1208.0 888 71.8
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1206.4 884 72.7
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1204.9 842 75.2
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1203.3 841 74.7
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1200.3 878 71.5
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1200.3 833 75.8
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1200.3 876 71.7
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1198.3 876 71.5
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1196.4 837 73.6
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1189.1 894 70.7
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1172.1 904 69.8
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1171.8 887 67.1
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1161.4 855 72.2
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1144.0 829 70.0
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1137.9 902 65.7
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1129.8 873 67.2
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1124.4 833 67.3
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1122.1 834 68.0
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1119.0 854 71.1
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1118.2 835 69.3
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1115.5 848 70.6
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1113.2 822 67.3
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1107.8 845 67.2
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1105.5 902 66.0
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1101.3 836 68.3
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1100.9 915 65.9
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1083.2 896 64.8
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 4.3e-271 938.3 848 61.1
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 8.2e-254 880.9 628 72.9
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 6.1e-249 864.8 859 54.9
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 2.9e-235 819.3 477 82.0
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 2.9e-235 819.3 626 71.9
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.2e-231 807.4 569 71.9
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 2.6e-231 806.2 567 73.2
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 5.9e-228 795.0 893 49.9
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 1.4e-216 757.3 829 48.9
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.5e-207 727.2 518 76.4
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.0e-203 713.0 536 68.3
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 3.3e-186 656.4 832 46.0
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 8.1e-185 651.7 498 69.9
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 1.7e-182 644.0 847 42.0
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 7.6e-175 618.6 576 60.9
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 4.5e-159 566.2 470 68.9
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 3.2e-149 533.5 850 37.2
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 2.8e-145 520.4 429 66.0
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 2.2e-126 457.6 370 70.8
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 1.2e-103 382.1 285 71.9
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 4.1e-96 357.1 208 83.7
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.2e-92 345.5 292 63.0
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.1e-92 344.7 241 70.1
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 1.4e-91 342.0 309 69.9
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 2.1e-84 318.2 263 65.0
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 2.8e-84 317.8 265 65.3
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.1e-83 314.3 229 68.6
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 5.2e-83 313.5 196 77.6
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 7.5e-82 309.7 190 80.0
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 6.0e-79 300.1 192 76.0
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.1e-61 242.7 139 92.8
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.1e-48 199.5 164 64.0
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.2e-47 196.1 144 67.4
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.3e-46 192.6 111 82.9
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.3e-46 192.6 129 71.3
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 6.7e-46 190.3 113 78.8
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 9.7e-37 159.8 99 81.8
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 2.2e-36 158.7 197 47.2
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 2.6e-34 151.8 91 84.6
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 2.9e-33 148.3 87 82.8
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 2.1e-23 115.5 69 89.9
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.0e-22 111.7 167 41.3
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.8e-20 104.4 82 65.9
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.8e-19 102.4 88 56.8
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 2.0e-18 99.0 61 77.0
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 6.5e-17 94.0 63 69.8
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.9e-16 92.4 74 62.2
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.6e-15 89.4 53 81.1
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 8.8e-14 83.6 59 74.6
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.7e-12 78.2 49 77.6
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 5.3e-11 74.3 72 52.8
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 5.3e-11 74.3 72 52.8
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 1.2e-10 73.2 49 79.6
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 1.2e-10 73.2 230 26.5
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 5.9e-10 70.9 42 83.3
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 2.7e-07 62.0 40 67.5
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 3.6e-07 61.6 138 40.6
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 6.1e-07 60.8 200 25.0


User provided reference genes

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