Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 0.0e+00 1280.4 655 100.0
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 0.0e+00 1194.9 659 92.6
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 0.0e+00 1193.3 656 92.4
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 0.0e+00 1186.8 659 92.1
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 0.0e+00 1179.5 659 91.4
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 0.0e+00 1144.4 655 89.8
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1129.0 655 88.4
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 0.0e+00 1123.6 655 87.9
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1121.7 656 88.9
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 0.0e+00 1120.1 657 88.0
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 0.0e+00 1120.1 657 88.0
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 0.0e+00 1119.8 657 88.1
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 5.6e-305 1050.4 654 83.2
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 9.9e-302 1039.6 659 81.6
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 6.2e-288 993.8 660 76.1
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 1.2e-286 989.6 659 76.3
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 9.9e-286 986.5 660 75.8
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 1.1e-284 983.0 659 76.0
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 5.4e-284 980.7 668 74.7
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 5.1e-282 974.2 655 76.2
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.5e-281 972.6 659 75.4
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 1.9e-281 972.2 666 74.5
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 3.3e-281 971.5 660 75.3
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 7.4e-281 970.3 659 75.9
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 1.1e-279 966.5 659 75.9
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 2.0e-278 962.2 655 75.9
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 4.5e-278 961.1 658 75.7
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 1.3e-277 959.5 660 74.5
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 4.9e-277 957.6 658 74.5
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 4.9e-277 957.6 659 75.0
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 6.5e-277 957.2 659 75.1
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 4.2e-276 954.5 660 73.6
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 7.1e-276 953.7 661 73.8
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 5.1e-274 947.6 660 74.2
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 1.5e-273 946.0 663 74.1
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 3.3e-273 944.9 659 73.6
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 1.6e-272 942.6 657 73.5
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 1.6e-272 942.6 657 73.1
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.8e-272 941.8 656 74.7
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 2.8e-272 941.8 660 73.5
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 3.1e-271 938.3 662 74.0
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 1.2e-270 936.4 658 72.6
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 1.2e-270 936.4 659 72.8
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 2.0e-270 935.6 657 73.8
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 4.5e-270 934.5 663 73.8
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 7.6e-270 933.7 656 74.4
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 1.3e-269 932.9 655 73.7
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 1.7e-269 932.6 703 70.0
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 1.7e-269 932.6 660 72.0
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.9e-269 931.8 655 72.8
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 6.5e-269 930.6 658 73.7
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 1.1e-268 929.9 657 73.7
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.1e-268 929.9 661 73.2
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 1.4e-268 929.5 664 72.9
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 2.5e-268 928.7 654 73.7
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 4.2e-268 927.9 654 74.0
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 4.2e-268 927.9 657 73.5
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 5.5e-268 927.5 658 73.7
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 9.3e-268 926.8 657 72.6
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 9.3e-268 926.8 658 72.3
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 9.3e-268 926.8 657 73.1
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 1.2e-267 926.4 658 72.3
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 1.2e-267 926.4 658 73.4
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 2.7e-267 925.2 699 69.2
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 2.7e-267 925.2 663 71.2
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 2.7e-267 925.2 660 72.7
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 3.5e-267 924.9 657 73.1
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 1.8e-266 922.5 655 72.1
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 3.0e-266 921.8 662 71.3
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 3.9e-266 921.4 656 73.2
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 9.7e-265 916.8 687 69.7
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 1.6e-264 916.0 658 72.6
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 2.8e-264 915.2 647 73.4
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 1.4e-263 912.9 653 73.2
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 2.6e-262 908.7 659 71.8
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 4.5e-262 907.9 665 71.7
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 5.9e-262 907.5 661 70.5
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 5.9e-262 907.5 656 72.1
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 7.7e-262 907.1 652 73.0
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 1.3e-261 906.4 664 70.2
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 7.2e-260 900.6 656 72.6
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.7e-259 898.7 683 69.7
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 6.1e-259 897.5 658 71.0
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 1.1e-257 893.3 681 69.2
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 1.5e-257 892.9 656 71.8
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.0e-257 892.5 656 69.7
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 2.5e-257 892.1 661 69.9
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 1.3e-256 889.8 656 69.2
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 1.4e-255 886.3 653 69.5
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 9.7e-241 837.0 656 67.8
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 2.8e-240 835.5 609 71.3
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 4.1e-239 831.6 745 60.9
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 3.4e-233 812.0 658 64.4
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 1.4e-231 806.6 655 63.8
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.0e-225 786.2 538 74.2
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 4.4e-217 758.4 506 77.3
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.5e-204 716.1 662 59.8
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 1.1e-186 657.5 626 57.5
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 2.6e-185 652.9 463 72.1
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 9.6e-180 634.4 512 65.8
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 4.4e-177 625.5 467 69.8
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.8e-165 587.0 464 67.5
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.2e-147 526.9 596 51.7
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 2.5e-140 503.4 372 69.9
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 6.7e-133 478.8 345 69.0
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 2.8e-131 473.4 333 71.2
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 1.4e-130 471.1 352 69.6
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 9.1e-114 415.2 344 63.1
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 2.9e-112 410.2 330 60.9
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.8e-112 409.8 344 62.5
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.9e-111 407.5 330 60.9
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.7e-110 403.7 462 51.9
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 4.0e-109 399.8 327 62.7
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.1e-103 381.7 303 65.0
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 8.3e-99 365.5 223 82.5
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 5.8e-92 342.8 261 70.1
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 1.2e-89 335.1 208 79.8
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 6.4e-67 259.6 231 59.7
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 4.2e-66 256.9 160 80.0
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 3.0e-64 250.8 169 74.0
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.9e-58 231.5 140 83.6
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 1.5e-47 195.3 141 68.8
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 9.6e-47 192.6 132 72.7
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 1.3e-46 192.2 156 63.5
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 1.7e-43 181.8 307 41.4
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 2.9e-43 181.0 162 58.0
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 4.9e-43 180.3 101 85.1
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 1.6e-41 175.3 117 74.4
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.0e-40 172.6 106 82.1
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 2.7e-33 147.9 290 35.2
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 3.6e-33 147.5 93 80.6
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.0e-32 146.0 146 52.1
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 8.7e-32 142.9 135 59.3
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 9.7e-31 139.4 141 51.1
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 2.5e-26 124.8 86 70.9
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 3.2e-26 124.4 93 67.7
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 1.2e-20 105.9 96 56.2
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 2.6e-20 104.8 132 48.5
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 2.2e-19 101.7 71 70.4
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.4e-16 92.4 57 70.2
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 3.9e-16 90.9 53 83.0
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 1.1e-15 89.4 52 82.7
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.5e-15 89.0 57 66.7
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 3.7e-14 84.3 52 76.9
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 2.6e-12 78.2 79 53.2
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 1.7e-11 75.5 121 37.2
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 8.5e-11 73.2 43 76.7
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 4.7e-09 67.4 73 50.7
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 1.0e-08 66.2 36 91.7
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.7e-06 57.8 29 96.6
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 3.7e-06 57.8 29 96.6


User provided reference genes

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