Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g28440 Schrenkiella parvula HOM05D006887 ORTHO05D004325 3.0e-183 645.2 365 100.0
AL8G42910 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.3e-96 357.5 360 63.1
C02p64040 Brassica napus HOM05D006887 ORTHO05D004325 1.3e-96 357.5 367 58.0
BolC2t12470H Brassica oleracea HOM05D006887 ORTHO05D004325 1.3e-96 357.5 367 58.0
BcaC03g18328 Brassica carinata HOM05D006887 ORTHO05D004325 1.4e-95 354.0 367 57.8
AT5G65330 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 7.9e-91 338.2 354 59.0
Thhalv10005313m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.4e-89 331.6 331 61.0
A02p43880 Brassica napus HOM05D006887 ORTHO05D004325 1.6e-88 330.5 363 55.1
BraA02t09311Z Brassica rapa HOM05D006887 ORTHO05D004325 1.6e-88 330.5 363 55.1
AT4G11250 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 3.6e-83 312.8 348 57.5
AL7G49930 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 6.1e-59 232.3 408 40.9
Carub.0003s3325 Capsella rubella HOM05D006887 ORTHO05D004325 2.2e-56 223.8 370 43.8
Carub.0008s2621 Capsella rubella HOM05D006887 ORTHO05D004325 2.2e-56 223.8 289 52.9
Thhalv10028282m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 7.0e-55 218.8 386 44.0
Carub.0007s3559 Capsella rubella HOM05D006887 ORTHO05D004325 1.3e-53 214.5 369 47.4
Carub.0007s3594 Capsella rubella HOM05D006887 ORTHO05D004325 6.5e-53 212.2 363 44.9
Thhalv10028184m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 1.5e-52 211.1 306 46.1
AL7G50480 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 1.6e-51 207.6 249 51.0
AL7G50550 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 8.8e-50 201.8 254 47.6
AT5G41200 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.7e-46 190.3 252 47.6
AT5G39750 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.9e-44 184.1 336 40.8
Carub.0007s3561 Capsella rubella HOM05D006887 ORTHO05D004325 5.6e-44 182.6 253 47.0
AT5G40220 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 2.1e-43 180.6 249 46.6
BcaB06g27414 Brassica carinata HOM05D006887 ORTHO05D004325 4.7e-43 179.5 340 39.1
CARHR058360 Cardamine hirsuta HOM05D006887 ORTHO05D004325 1.0e-42 178.3 264 50.8
AT5G38740 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.2e-42 176.0 336 39.3
AT5G40120 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 5.2e-42 176.0 255 48.2
A04p12980 Brassica napus HOM05D006887 ORTHO05D004325 4.4e-41 172.9 343 39.9
A04p13000 Brassica napus HOM05D006887 ORTHO05D004325 4.4e-41 172.9 356 37.9
BraA04t16949Z Brassica rapa HOM05D006887 ORTHO05D004325 2.2e-40 170.6 352 38.4
BcaB06g27394 Brassica carinata HOM05D006887 ORTHO05D004325 6.4e-40 169.1 360 39.7
A04p12860 Brassica napus HOM05D006887 ORTHO05D004325 1.1e-39 168.3 358 38.5
BraA04t16961Z Brassica rapa HOM05D006887 ORTHO05D004325 2.4e-39 167.2 359 40.7
BolC4t26255H Brassica oleracea HOM05D006887 ORTHO05D004325 5.4e-39 166.0 348 37.4
BcaB08g34810 Brassica carinata HOM05D006887 ORTHO05D004325 1.6e-38 164.5 359 38.2
BraA04t16959Z Brassica rapa HOM05D006887 ORTHO05D004325 2.5e-36 157.1 339 37.5
AT5G39810 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.2e-35 154.8 335 37.9
BolC4t26262H Brassica oleracea HOM05D006887 ORTHO05D004325 1.5e-33 147.9 345 36.8
CARHR279290 Cardamine hirsuta HOM05D006887 ORTHO05D004325 3.4e-33 146.7 290 41.0
AT4G02235 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 4.4e-33 146.4 197 49.2
BcaB06g27442 Brassica carinata HOM05D006887 ORTHO05D004325 6.4e-32 142.5 332 36.4
BcaB06g27671 Brassica carinata HOM05D006887 ORTHO05D004325 6.4e-32 142.5 370 35.7
Carub.0003s1843 Capsella rubella HOM05D006887 ORTHO05D004325 8.3e-32 142.1 200 48.5
BolC4t26260H Brassica oleracea HOM05D006887 ORTHO05D004325 1.1e-31 141.7 338 35.5
CARHR094030 Cardamine hirsuta HOM05D006887 ORTHO05D004325 3.2e-31 140.2 204 46.1
C04p46670 Brassica napus HOM05D006887 ORTHO05D004325 9.2e-31 138.7 304 36.2
AT3G18650 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 1.6e-30 137.9 282 39.7
C04p46390 Brassica napus HOM05D006887 ORTHO05D004325 3.0e-29 133.7 341 33.4
AL3G31960 Arabidopsis lyrata HOM05D006887 ORTHO05D004325 6.6e-29 132.5 200 48.5
BraA05t21939Z Brassica rapa HOM05D006887 ORTHO05D004325 1.1e-28 131.7 294 39.5
AT5G37415 Arabidopsis thaliana HOM05D006887 ORTHO05D004325 9.5e-28 128.6 185 44.3
Sp3g16720 Schrenkiella parvula HOM05D006887 ORTHO05D004325 1.6e-27 127.9 280 36.4
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 3.6e-27 126.7 254 39.8
BcaB04g18996 Brassica carinata HOM05D006887 ORTHO05D004325 4.7e-27 126.3 266 40.6
BcaB04g20759 Brassica carinata HOM05D006887 ORTHO05D004325 4.7e-27 126.3 272 39.7
BcaC05g28586 Brassica carinata HOM05D006887 ORTHO05D004325 6.2e-27 125.9 294 36.4
BcaB06g25916 Brassica carinata HOM05D006887 ORTHO05D004325 1.4e-26 124.8 294 38.4
BolC5t33421H Brassica oleracea HOM05D006887 ORTHO05D004325 3.1e-26 123.6 294 36.1
BcaC01g03686 Brassica carinata HOM05D006887 ORTHO05D004325 6.8e-26 122.5 225 43.1
C03p49630 Brassica napus HOM05D006887 ORTHO05D004325 6.8e-26 122.5 225 43.1
BcaC09g48822 Brassica carinata HOM05D006887 ORTHO05D004325 1.5e-25 121.3 198 42.9
C01p45590 Brassica napus HOM05D006887 ORTHO05D004325 1.5e-25 121.3 198 42.9
BolC1t04520H Brassica oleracea HOM05D006887 ORTHO05D004325 1.5e-25 121.3 198 42.9
Thhalv10028281m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 3.4e-25 120.2 223 42.6
C04p46750 Brassica napus HOM05D006887 ORTHO05D004325 7.5e-25 119.0 372 31.5
CARHR283740 Cardamine hirsuta HOM05D006887 ORTHO05D004325 8.3e-24 115.5 197 44.7
BcaB06g27670 Brassica carinata HOM05D006887 ORTHO05D004325 5.4e-23 112.8 353 32.9
CARHR157630 Cardamine hirsuta HOM05D006887 ORTHO05D004325 9.2e-23 112.1 175 37.7
BraA01t03660Z Brassica rapa HOM05D006887 ORTHO05D004325 2.1e-22 110.9 149 47.7
A01p35810 Brassica napus HOM05D006887 ORTHO05D004325 2.3e-21 107.5 243 37.4
Thhalv10022126m.g Eutrema salsugineum HOM05D006887 ORTHO05D004325 8.6e-21 105.5 205 40.0
BcaB06g27440 Brassica carinata HOM05D006887 ORTHO05D004325 1.1e-18 98.6 90 56.7
CARHR262050 Cardamine hirsuta HOM05D006887 ORTHO05D004325 3.4e-17 93.6 58 74.1
Carub.0007s3592 Capsella rubella HOM05D006887 ORTHO05D004325 1.7e-16 91.3 150 45.3
THA.LOC104805962 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.3e-13 81.6 158 34.8
CARHR112470 Cardamine hirsuta HOM05D006887 ORTHO05D004325 6.6e-13 79.3 343 30.6
THA.LOC104810872 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 2.5e-12 77.4 158 33.5
Carub.0006s2465 Capsella rubella HOM05D007946 ORTHO05D004325 4.3e-12 76.6 235 32.8
Carub.0006s2523 Capsella rubella HOM05D007946 ORTHO05D004325 7.3e-12 75.9 218 32.6
THA.LOC104801507 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 7.3e-12 75.9 185 31.4
Thhalv10002808m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 3.6e-11 73.6 217 30.9
CARHR186490 Cardamine hirsuta HOM05D007946 ORTHO05D004325 4.7e-11 73.2 76 50.0
Aa31LG8G6760 Aethionema arabicum HOM05D006887 ORTHO05D004325 8.1e-11 72.4 176 30.7
AL6G38970 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 8.1e-11 72.4 207 30.9
CARHR186690 Cardamine hirsuta HOM05D007946 ORTHO05D004325 8.1e-11 72.4 76 51.3
Prupe.3G148900 Prunus persica HOM05D000307 ORTHO05D000166 8.1e-11 72.4 132 34.1
THA.LOC109116041 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.1e-10 72.0 241 30.7
Prupe.2G110900 Prunus persica HOM05D000307 ORTHO05D000166 1.8e-10 71.2 223 28.7
THA.LOC109116042 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.8e-10 71.2 147 38.1
MD17G1250500 Malus domestica HOM05D000307 ORTHO05D000166 4.0e-10 70.1 132 34.1
THA.LOC104804829 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 4.0e-10 70.1 191 34.6
AL6G38960 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 5.2e-10 69.7 203 30.0
Thhalv10005435m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 8.9e-10 68.9 235 29.4
AL6G40080 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 1.5e-09 68.2 206 30.6
AL6G40090 Arabidopsis lyrata HOM05D007946 ORTHO05D004325 2.0e-09 67.8 204 30.4
TAR365G0201 Trochodendron aralioides HOM05D000307 ORTHO05D000166 2.0e-09 67.8 123 32.5
Aa31LG11G7790 Aethionema arabicum HOM05D006887 ORTHO05D004325 3.4e-09 67.0 79 45.6
ATR0605G195 Amborella trichopoda HOM05D000307 ORTHO05D000166 3.4e-09 67.0 133 30.1
AT5G26950 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.4e-09 66.6 209 30.1
AT5G27580 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 5.8e-09 66.2 204 30.4
A09p48100 Brassica napus HOM05D007946 ORTHO05D004325 5.8e-09 66.2 222 29.3
AT5G27050 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 7.6e-09 65.9 67 53.7
Sp5g22080 Schrenkiella parvula HOM05D007946 ORTHO05D004325 7.6e-09 65.9 199 31.7
ClCG02G000370 Citrullus lanatus HOM05D000307 ORTHO05D000166 1.7e-08 64.7 230 23.0
Manes.10G129900 Manihot esculenta HOM05D006887 ORTHO05D004325 1.7e-08 64.7 75 41.3
Rhsim08G0003700 Rhododendron simsii HOM05D000307 ORTHO05D000166 1.7e-08 64.7 142 26.8
BolC8t50656H Brassica oleracea HOM05D007946 ORTHO05D004325 2.2e-08 64.3 231 30.7
Haze_14940 Corylus avellana HOM05D006887 ORTHO05D009969 2.2e-08 64.3 163 28.8
MBI09_g18620_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.2e-08 64.3 147 30.6
QL10p050899 Quercus lobata HOM05D006887 ORTHO05D009969 2.2e-08 64.3 53 54.7
A09p32540 Brassica napus HOM05D007946 ORTHO05D004325 2.9e-08 63.9 247 29.1
MBI16_g16368_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 2.9e-08 63.9 150 32.0
AT5G27070 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 3.8e-08 63.5 209 29.7
BraA04t16923Z Brassica rapa HOM05D006887 ORTHO05D004325 3.8e-08 63.5 172 33.1
AT5G26865 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 4.9e-08 63.2 71 50.7
BcaB01g00130 Brassica carinata HOM05D007946 ORTHO05D004325 4.9e-08 63.2 239 27.2
Cpa.g.sc365.3 Carica papaya HOM05D006887 ORTHO05D009969 6.4e-08 62.8 138 31.9
Dinv15101 Davidia involucrata HOM05D000307 ORTHO05D000166 6.4e-08 62.8 260 26.9
Psat6g001960 Pisum sativum HOM05D000307 ORTHO05D000166 6.4e-08 62.8 191 27.7
QL06p031925 Quercus lobata HOM05D000307 ORTHO05D000166 6.4e-08 62.8 141 29.1
Atru.chr6.1689 Acer truncatum HOM05D006887 ORTHO05D009969 8.4e-08 62.4 230 24.3
Cpa.g.sc192.10 Carica papaya HOM05D006887 ORTHO05D004325 8.4e-08 62.4 72 41.7
MD02G1297800 Malus domestica HOM05D000307 ORTHO05D000166 8.4e-08 62.4 318 25.2
C08p30340 Brassica napus HOM05D007946 ORTHO05D004325 1.1e-07 62.0 236 29.2
Potri.010G238900 Populus trichocarpa HOM05D015295 ORTHO05D009969 1.1e-07 62.0 71 40.8
THA.LOC104801949 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.1e-07 62.0 72 43.1
THA.LOC104801951 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.1e-07 62.0 72 43.1
THA.LOC104825360 Tarenaya hassleriana HOM05D006887 ORTHO05D004325 1.1e-07 62.0 72 43.1
ATR0626G033 Amborella trichopoda HOM05D000307 ORTHO05D000166 1.4e-07 61.6 250 24.8
FvH4_2g27520 Fragaria vesca HOM05D000307 ORTHO05D000166 1.4e-07 61.6 169 29.0
FAN15G0593 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.4e-07 61.6 169 29.0
FAN24G2406 Fragaria x ananassa HOM05D000307 ORTHO05D000166 1.4e-07 61.6 169 29.0
AT5G27944 Arabidopsis thaliana HOM05D007946 ORTHO05D004325 1.9e-07 61.2 206 29.6
BraA09t38796Z Brassica rapa HOM05D007946 ORTHO05D004325 2.4e-07 60.8 248 28.6
Cfa007171 Carpinus fangiana HOM05D006887 ORTHO05D009969 2.4e-07 60.8 159 28.3
MBI16_g19061_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 3.2e-07 60.5 164 31.7
Thhalv10005452m.g Eutrema salsugineum HOM05D007946 ORTHO05D004325 4.2e-07 60.1 250 27.6
Lj1g0022539 Lotus japonicus HOM05D008089 ORTHO05D000166 4.2e-07 60.1 138 29.0
EL10Ac3g07467 Beta vulgaris HOM05D022259 ORTHO05D000166 5.4e-07 59.7 155 27.7
Haze_01459 Corylus avellana HOM05D006887 ORTHO05D009969 5.4e-07 59.7 57 49.1
MBI07_g09577_MAGBIO Magnolia biondii HOM05D000307 ORTHO05D000166 5.4e-07 59.7 195 24.1
RcHm_v2.0_Chr6g0296351 Rosa chinensis HOM05D000307 ORTHO05D000166 5.4e-07 59.7 142 28.9
Sp1g35160 Schrenkiella parvula HOM05D007946 ORTHO05D004325 5.4e-07 59.7 202 30.2
PGSC0003DMG400027886 Solanum tuberosum HOM05D000307 ORTHO05D000166 5.4e-07 59.7 139 30.2
TAR362G0570 Trochodendron aralioides HOM05D000307 ORTHO05D000166 5.4e-07 59.7 139 27.3
TAR625G0022 Trochodendron aralioides HOM05D000307 ORTHO05D000166 5.4e-07 59.7 210 25.2
TAR625G0700 Trochodendron aralioides HOM05D000307 ORTHO05D000166 5.4e-07 59.7 135 28.9
FAN13G0405 Fragaria x ananassa HOM05D016120 ORTHO05D013324 7.1e-07 59.3 159 36.5
FAN27G3405 Fragaria x ananassa HOM05D000307 ORTHO05D000166 9.3e-07 58.9 168 27.4
MBI16_g19060_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 9.3e-07 58.9 178 30.9
Potri.004G222200 Populus trichocarpa HOM05D006887 ORTHO05D009969 9.3e-07 58.9 75 37.3
TAR362G0043 Trochodendron aralioides HOM05D000307 ORTHO05D000166 9.3e-07 58.9 139 27.3
Cfa015195 Carpinus fangiana HOM05D006887 ORTHO05D009969 1.2e-06 58.5 53 50.9
TAR362G1006 Trochodendron aralioides HOM05D000307 ORTHO05D000166 1.2e-06 58.5 139 26.6
FvH4_5g27070 Fragaria vesca HOM05D016120 ORTHO05D013324 1.6e-06 58.2 159 36.5
Medtr6g005440 Medicago truncatula HOM05D008089 ORTHO05D000166 1.6e-06 58.2 181 24.9
Sabra01G0168300 Salix brachista HOM05D006887 ORTHO05D004325 1.6e-06 58.2 135 28.9
ATR0075G005 Amborella trichopoda HOM05D006887 ORTHO05D004325 2.1e-06 57.8 40 62.5
COL.COLO4_22397 Corchorus olitorius HOM05D000307 ORTHO05D000166 2.1e-06 57.8 236 24.2
AT5G55690 Arabidopsis thaliana HOM05D000307 ORTHO05D000166 2.7e-06 57.4 139 28.1
Haze_14188 Corylus avellana HOM05D000307 ORTHO05D000166 2.7e-06 57.4 148 27.7
FAN20G0315 Fragaria x ananassa HOM05D000307 ORTHO05D000166 2.7e-06 57.4 168 27.4
Potri.008G020300 Populus trichocarpa HOM05D015295 ORTHO05D009969 2.7e-06 57.4 54 46.3
BcaB03g15376 Brassica carinata HOM05D007946 ORTHO05D004325 3.5e-06 57.0 78 47.4
C08p30320 Brassica napus HOM05D007946 ORTHO05D004325 3.5e-06 57.0 262 25.2
Gohir.D03G048600 Gossypium hirsutum HOM05D000307 ORTHO05D000166 3.5e-06 57.0 220 24.5
Prupe.7G030800 Prunus persica HOM05D000307 ORTHO05D000166 3.5e-06 57.0 168 35.7
BcaB01g04354 Brassica carinata HOM05D000307 ORTHO05D000166 4.6e-06 56.6 129 29.5
BcaC08g43051 Brassica carinata HOM05D007946 ORTHO05D004325 4.6e-06 56.6 237 29.1
C06p03120 Brassica napus HOM05D007946 ORTHO05D004325 4.6e-06 56.6 232 29.7
BolC6t35430H Brassica oleracea HOM05D007946 ORTHO05D004325 4.6e-06 56.6 232 29.7
CsaV3_2G019470 Cucumis sativus L. HOM05D000307 ORTHO05D000166 4.6e-06 56.6 163 25.8
FAN04G1442 Fragaria x ananassa HOM05D016120 ORTHO05D013324 4.6e-06 56.6 155 29.0
Sabra08G0013600 Salix brachista HOM05D015295 ORTHO05D009969 4.6e-06 56.6 60 43.3
TAR625G0088 Trochodendron aralioides HOM05D000307 ORTHO05D000166 4.6e-06 56.6 139 25.9
TAR625G0813 Trochodendron aralioides HOM05D000307 ORTHO05D000166 4.6e-06 56.6 139 25.9
FvH4_6g46801 Fragaria vesca HOM05D006887 ORTHO05D004325 6.0e-06 56.2 67 38.8
Oeu061767.1 Olea europaea HOM05D000307 ORTHO05D000166 6.0e-06 56.2 212 26.4
Psat1g082000 Pisum sativum HOM05D000307 ORTHO05D000166 6.0e-06 56.2 242 24.8
Carub.0008s1606 Capsella rubella HOM05D000307 ORTHO05D000166 7.8e-06 55.8 139 25.9
TWI38G1011 Tripterygium wilfordii HOM05D000307 ORTHO05D000166 7.8e-06 55.8 234 25.6


User provided reference genes

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