Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 4.5e-267 924.5 635 100.0
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 2.1e-216 756.1 639 81.1
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 2.7e-211 739.2 641 83.0
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 7.8e-211 737.6 640 82.3
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 3.0e-210 735.7 640 81.7
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 7.1e-204 714.5 647 78.8
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 6.0e-203 711.4 646 79.4
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 9.5e-201 704.1 645 77.1
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 8.7e-194 681.0 645 74.9
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 2.5e-193 679.5 638 74.8
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 1.1e-191 674.1 638 73.2
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 4.0e-191 672.2 525 77.7
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.9e-188 663.3 521 80.6
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 4.6e-187 658.7 631 74.6
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 1.8e-183 646.7 631 75.0
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 4.0e-183 645.6 658 72.2
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 2.9e-149 533.1 645 62.0
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.1e-148 531.2 645 61.9
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 1.4e-148 530.8 651 58.1
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.7e-147 526.6 645 61.7
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 8.8e-146 521.5 648 59.7
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 1.5e-145 520.8 642 62.0
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 4.1e-143 512.7 655 55.6
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.6e-142 510.0 638 58.9
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 4.2e-140 502.7 641 56.6
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 7.2e-140 501.9 640 55.8
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 9.4e-140 501.5 647 59.5
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 1.0e-138 498.0 648 56.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 7.0e-135 485.3 538 60.8
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 3.5e-134 483.0 637 54.0
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 2.9e-133 479.9 652 56.7
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 5.0e-133 479.2 696 51.3
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 6.1e-131 472.2 645 53.2
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 1.2e-129 468.0 642 56.5
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 3.7e-128 463.0 649 57.5
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 6.3e-128 462.2 646 56.8
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 6.3e-128 462.2 647 53.5
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 2.4e-127 460.3 480 60.4
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 3.5e-126 456.4 648 54.2
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 7.7e-126 455.3 553 55.7
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 1.3e-125 454.5 649 56.4
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.9e-124 450.7 573 50.6
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.9e-124 450.7 646 49.2
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 3.2e-124 449.9 651 52.7
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.6e-123 447.6 641 49.3
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 3.6e-123 446.4 646 49.5
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 8.0e-123 445.3 553 53.3
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.3e-122 443.7 655 51.8
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 2.0e-121 440.7 535 52.5
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 7.5e-121 438.7 643 56.6
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 1.3e-120 438.0 654 49.4
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.8e-120 436.8 659 51.4
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 4.8e-120 436.0 531 52.0
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 5.4e-119 432.6 638 57.8
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 7.0e-119 432.2 529 54.6
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 1.6e-118 431.0 651 49.5
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 7.7e-118 428.7 644 48.4
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.7e-117 427.6 483 59.4
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 1.7e-117 427.6 648 50.9
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.3e-117 427.2 659 53.3
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 5.0e-117 426.0 635 53.1
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 6.6e-117 425.6 650 49.2
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 8.6e-117 425.2 650 47.2
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 3.3e-116 423.3 664 55.0
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 3.3e-116 423.3 445 56.9
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 4.2e-116 422.9 475 60.0
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 4.2e-116 422.9 483 59.0
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.6e-115 421.0 644 56.4
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 2.8e-115 420.2 439 59.2
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 3.6e-115 419.9 561 54.2
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 6.1e-115 419.1 644 55.1
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 2.3e-114 417.2 564 52.7
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 5.2e-114 416.0 507 56.0
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 4.4e-113 412.9 676 53.0
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 1.3e-112 411.4 423 57.2
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 2.8e-112 410.2 539 52.1
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 4.9e-112 409.5 475 61.3
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.4e-111 407.1 527 55.2
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 3.1e-111 406.8 365 62.2
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 3.1e-111 406.8 642 51.2
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 9.2e-111 405.2 554 53.2
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.7e-110 403.7 356 64.0
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 4.5e-110 402.9 672 47.5
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 5.9e-110 402.5 364 62.6
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 1.0e-109 401.7 505 53.1
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 1.3e-109 401.4 529 52.2
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.7e-109 401.0 561 53.5
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 3.8e-109 399.8 457 53.8
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 3.8e-109 399.8 642 51.6
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 5.0e-109 399.4 529 59.5
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 6.6e-109 399.1 418 61.0
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 2.5e-108 397.1 659 47.8
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 3.3e-108 396.7 640 45.6
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 9.5e-108 395.2 535 50.1
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.1e-107 394.0 475 59.8
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 2.3e-106 390.6 556 52.3
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 4.0e-106 389.8 554 52.0
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 4.4e-105 386.3 539 46.9
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 2.4e-103 380.6 364 60.2
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 4.1e-103 379.8 349 61.0
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 6.6e-101 372.5 685 42.8
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.9e-96 357.1 377 60.7
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 5.4e-95 352.8 460 49.6
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 7.8e-94 349.0 460 50.2
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.9e-92 344.4 537 50.1
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.2e-91 341.7 474 48.7
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 2.1e-91 340.9 636 40.6
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 3.4e-89 333.6 592 42.1
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 9.9e-89 332.0 367 54.8
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.2e-83 312.8 374 58.3
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.1e-82 312.0 374 58.0
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.1e-82 312.0 374 58.0
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.4e-82 311.6 374 58.0
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 1.1e-76 292.0 356 49.7
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 1.2e-75 288.5 350 50.0
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 9.0e-74 282.3 342 48.8
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 2.0e-73 281.2 320 52.2
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 5.4e-71 273.1 320 60.3
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.5e-68 264.2 474 43.9
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.4e-63 248.4 379 44.3
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 9.0e-58 229.2 422 42.2
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 8.4e-56 222.6 276 48.2
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 8.4e-56 222.6 314 46.2
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 7.1e-55 219.5 358 43.0
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 7.1e-47 193.0 332 41.6
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 2.3e-45 188.0 246 47.6
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 6.9e-34 149.8 134 64.2
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 2.9e-32 144.4 159 53.5
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 3.8e-32 144.1 103 70.9
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 5.0e-32 143.7 276 47.1
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.6e-30 138.7 458 32.3
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 3.2e-23 114.4 198 41.9
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.7e-22 111.3 337 38.6
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 1.8e-21 108.6 371 31.3
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 2.3e-21 108.2 266 34.2
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.3e-21 108.2 233 38.6
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 2.9e-16 91.3 91 54.9
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 3.2e-15 87.8 339 28.0
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 1.2e-14 85.9 60 75.0
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 3.7e-11 74.3 103 50.5
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.4e-10 72.4 53 64.2
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 4.1e-10 70.9 47 80.9
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 2.2e-08 65.1 41 75.6
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.2e-06 59.3 46 71.7


User provided reference genes

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