Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g24360 Schrenkiella parvula HOM05D001053 ORTHO05D021119 1.2e-58 229.6 111 100.0
AT5G61060 Arabidopsis thaliana HOM05D001053 ORTHO05D004820 1.4e-22 109.8 75 69.3
Thhalv10003787m.g Eutrema salsugineum HOM05D001053 ORTHO05D004820 1.8e-22 109.4 66 78.8
CARHR274760 Cardamine hirsuta HOM05D001053 ORTHO05D004820 3.1e-22 108.6 75 69.3
Aa31LG11G2250 Aethionema arabicum HOM05D001053 ORTHO05D004820 6.9e-22 107.5 66 75.8
AL8G37710 Arabidopsis lyrata HOM05D001053 ORTHO05D004820 4.5e-21 104.8 75 68.0
Sp2g24350 Schrenkiella parvula HOM05D001053 ORTHO05D004820 4.5e-21 104.8 66 72.7
Carub.0008s2176 Capsella rubella HOM05D001053 ORTHO05D004820 5.8e-21 104.4 66 71.2
A03p46750 Brassica napus HOM05D001053 ORTHO05D004820 4.9e-20 101.3 66 71.2
Carub.0008s2175 Capsella rubella HOM05D001053 ORTHO05D004820 6.5e-20 100.9 74 64.9
Carub.0008s2174 Capsella rubella HOM05D001053 ORTHO05D004820 8.4e-20 100.5 75 68.0
AL299U10010 Arabidopsis lyrata HOM05D001053 ORTHO05D021119 1.1e-19 100.1 65 72.3
BcaC06g33180 Brassica carinata HOM05D001053 ORTHO05D004820 2.5e-19 99.0 66 72.7
BolC7t45003H Brassica oleracea HOM05D001053 ORTHO05D004820 2.5e-19 99.0 66 72.7
BraA03t13797Z Brassica rapa HOM05D001053 ORTHO05D004820 2.5e-19 99.0 66 72.7
CARHR274770 Cardamine hirsuta HOM05D001053 ORTHO05D004820 4.2e-19 98.2 66 69.7
C07p44790 Brassica napus HOM05D001053 ORTHO05D004820 1.6e-18 96.3 66 71.2
AT5G61070 Arabidopsis thaliana HOM05D001053 ORTHO05D004820 1.5e-16 89.7 66 65.2
AL8G37720 Arabidopsis lyrata HOM05D001053 ORTHO05D004820 1.9e-16 89.4 66 65.2
BcaC03g18073 Brassica carinata HOM05D001053 ORTHO05D004820 2.5e-16 89.0 46 84.8
A02p41350 Brassica napus HOM05D001053 ORTHO05D004820 2.5e-16 89.0 46 84.8
C02p61330 Brassica napus HOM05D001053 ORTHO05D004820 2.5e-16 89.0 46 84.8
BolC2t12181H Brassica oleracea HOM05D001053 ORTHO05D004820 2.5e-16 89.0 46 84.8
A02p41380 Brassica napus HOM05D001053 ORTHO05D004820 4.3e-16 88.2 55 72.7
BraA02t09080Z Brassica rapa HOM05D001053 ORTHO05D004820 4.3e-16 88.2 55 72.7
BraA09t36371Z Brassica rapa HOM05D001053 ORTHO05D004820 6.3e-15 84.3 75 60.0
THA.LOC104801191 Tarenaya hassleriana HOM05D001053 ORTHO05D004820 2.4e-14 82.4 72 56.9
Ah.11g047830 Amaranthus hybridus HOM05D001053 ORTHO05D004820 1.5e-13 79.7 47 70.2
EL10Ac5g11123 Beta vulgaris HOM05D001053 ORTHO05D004820 7.6e-13 77.4 45 71.1
A09p07210 Brassica napus HOM05D001053 ORTHO05D004820 7.6e-13 77.4 49 71.4
C09p08060 Brassica napus HOM05D001053 ORTHO05D004820 7.6e-13 77.4 66 60.6
BolC9t53720H Brassica oleracea HOM05D001053 ORTHO05D004820 7.6e-13 77.4 66 60.6
AUR62021568 Chenopodium quinoa HOM05D001053 ORTHO05D004820 7.6e-13 77.4 63 55.6
AUR62008521 Chenopodium quinoa HOM05D001053 ORTHO05D004820 1.0e-12 77.0 45 68.9
Hund02590 Selenicereus undatus HOM05D001053 ORTHO05D004820 1.3e-12 76.6 51 64.7
Gohir.D03G096500 Gossypium hirsutum HOM05D001053 ORTHO05D004820 1.7e-12 76.3 69 52.2
Cpa.g.sc94.49 Carica papaya HOM05D001053 ORTHO05D004820 3.8e-12 75.1 63 60.3
Gohir.A03G069900 Gossypium hirsutum HOM05D001053 ORTHO05D004820 3.8e-12 75.1 64 51.6
Gorai.003G101100 Gossypium raimondii HOM05D001053 ORTHO05D004820 6.5e-12 74.3 69 50.7
AUR62021569 Chenopodium quinoa HOM05D001053 ORTHO05D004820 1.4e-11 73.2 49 65.3
ClCG06G015680 Citrullus lanatus HOM05D001053 ORTHO05D004820 1.9e-11 72.8 54 61.1
Glyma.05G021400 Glycine max HOM05D001053 ORTHO05D004820 1.9e-11 72.8 54 63.0
Sc04g0004320 Simmondsia chinensis HOM05D001053 ORTHO05D004820 1.9e-11 72.8 49 67.3
Prupe.5G204500 Prunus persica HOM05D001053 ORTHO05D004820 2.5e-11 72.4 54 59.3
FvH4_5g13910 Fragaria vesca HOM05D001053 ORTHO05D004820 3.2e-11 72.0 52 61.5
FAN08G0910 Fragaria x ananassa HOM05D001053 ORTHO05D004820 3.2e-11 72.0 52 61.5
FAN18G3650 Fragaria x ananassa HOM05D001053 ORTHO05D004820 3.2e-11 72.0 52 61.5
FAN13G0112 Fragaria x ananassa HOM05D001053 ORTHO05D004820 7.2e-11 70.9 52 59.6
Lj4g0023799 Lotus japonicus HOM05D001053 ORTHO05D004820 9.4e-11 70.5 48 64.6
RcHm_v2.0_Chr7g0183031 Rosa chinensis HOM05D001053 ORTHO05D004820 9.4e-11 70.5 50 62.0
Duzib205G1512 Durio zibethinus HOM05D001053 ORTHO05D004820 1.2e-10 70.1 64 50.0
TAR629G1683 Trochodendron aralioides HOM05D001053 ORTHO05D004820 1.2e-10 70.1 45 64.4
TAR629G3345 Trochodendron aralioides HOM05D001053 ORTHO05D004820 1.2e-10 70.1 45 64.4
Migut.D01491 Erythranthe guttata HOM05D001053 ORTHO05D004820 1.6e-10 69.7 51 54.9
Migut.D01742 Erythranthe guttata HOM05D001053 ORTHO05D004820 1.6e-10 69.7 51 56.9
QL10p019416 Quercus lobata HOM05D001053 ORTHO05D004820 1.6e-10 69.7 49 59.2
Ciclev10019240m.g Citrus clementina HOM05D001053 ORTHO05D004820 2.1e-10 69.3 67 52.2
BcaB07g34221 Brassica carinata HOM05D001053 ORTHO05D004820 2.7e-10 68.9 68 58.8
MD06G1202300 Malus domestica HOM05D001053 ORTHO05D004820 2.7e-10 68.9 47 63.8
MD14G1211400 Malus domestica HOM05D001053 ORTHO05D004820 2.7e-10 68.9 47 63.8
Medtr4g109500 Medicago truncatula HOM05D001053 ORTHO05D004820 2.7e-10 68.9 52 59.6
SGA_v2.0_scaffold313G48312 Striga asiatica HOM05D000001 ORTHO05D004820 2.7e-10 68.9 49 63.3
MSTRG.22987 Avicennia marina HOM05D001053 ORTHO05D004820 4.6e-10 68.2 51 58.8
CANSAT80G2151 Cannabis sativa HOM05D001053 ORTHO05D004820 4.6e-10 68.2 52 59.6
Dinv17408 Davidia involucrata HOM05D001053 ORTHO05D004820 6.1e-10 67.8 51 56.9
Eucgr.K02530 Eucalyptus grandis HOM05D001053 ORTHO05D004820 6.1e-10 67.8 45 62.2
Migut.D01741 Erythranthe guttata HOM05D001053 ORTHO05D004820 7.9e-10 67.4 46 60.9
Glyma.17G078000 Glycine max HOM05D001053 ORTHO05D004820 7.9e-10 67.4 48 60.4
HanXRQChr16g0502421 Helianthus annuus HOM05D001053 ORTHO05D004820 7.9e-10 67.4 48 60.4
Eucgr.L02060 Eucalyptus grandis HOM05D001053 ORTHO05D004820 1.0e-09 67.0 49 57.1
SalBow1G7771 Salvia bowleyana HOM05D001053 ORTHO05D004820 1.0e-09 67.0 53 60.4
SalBow5G2522 Salvia bowleyana HOM05D001053 ORTHO05D004820 1.0e-09 67.0 65 50.8
GSVIVG01007870001 Vitis vinifera HOM05D001053 ORTHO05D004820 1.0e-09 67.0 48 58.3
Duzib068G1187 Durio zibethinus HOM05D001053 ORTHO05D004820 1.4e-09 66.6 64 48.4
Actinidia04827 Actinidia chinensis HOM05D001053 ORTHO05D021119 1.8e-09 66.2 52 53.8
Hma1.2p1_0060F.1_g033160 Hydrangea macrophylla HOM05D001053 ORTHO05D004820 1.8e-09 66.2 50 56.0
Sed0006061 Sechium edule HOM05D001053 ORTHO05D004820 1.8e-09 66.2 46 58.7
Aqoxy3G03637 Aquilegia oxysepala HOM05D001053 ORTHO05D004820 2.3e-09 65.9 49 59.2
Nn3g17442 Nelumbo nucifera HOM05D001053 ORTHO05D004820 2.3e-09 65.9 47 55.3
Rhsim08G0146300 Rhododendron simsii HOM05D001053 ORTHO05D004820 3.0e-09 65.5 59 49.2
HPP92_006052 Vanilla planifolia HOM05D001053 ORTHO05D004820 3.0e-09 65.5 46 58.7
PGR044G1429 Punica granatum HOM05D001053 ORTHO05D004820 3.9e-09 65.1 55 54.5
Sed0000594 Sechium edule HOM05D001053 ORTHO05D004820 3.9e-09 65.1 54 59.3
Lsat_1_v5_gn_4_111000 Lactuca sativa HOM05D001053 ORTHO05D004820 5.1e-09 64.7 44 63.6
Atru.chr9.430 Acer truncatum HOM05D001053 ORTHO05D004820 6.7e-09 64.3 44 63.6
Eucgr.B01265 Eucalyptus grandis HOM05D001053 ORTHO05D004820 6.7e-09 64.3 49 53.1
MELO3C017221.2 Cucumis melo HOM05D001053 ORTHO05D004820 8.8e-09 63.9 44 61.4
ECA247G0276 Erigeron canadensis HOM05D001053 ORTHO05D004820 8.8e-09 63.9 52 57.7
PSO017G5497 Papaver somniferum HOM05D001053 ORTHO05D004820 8.8e-09 63.9 43 60.5
TWI81G0708 Tripterygium wilfordii HOM05D001053 ORTHO05D004820 8.8e-09 63.9 47 57.4
CDE02G0998 Ceratophyllum demersum HOM05D001053 ORTHO05D021119 1.1e-08 63.5 46 56.5
ECA232G3750 Erigeron canadensis HOM05D001053 ORTHO05D004820 1.1e-08 63.5 61 54.1
Eucgr.K02528 Eucalyptus grandis HOM05D001053 ORTHO05D004820 1.1e-08 63.5 49 53.1
Phvul.003G185200 Phaseolus vulgaris HOM05D001053 ORTHO05D004820 1.1e-08 63.5 69 46.4
Thecc.03G101100 Theobroma cacao HOM05D001053 ORTHO05D004820 1.1e-08 63.5 52 51.9
Cfa019326 Carpinus fangiana HOM05D001053 ORTHO05D004820 1.5e-08 63.2 45 60.0
Nitab4.5_0003660g0060 Nicotiana tabacum HOM05D001053 ORTHO05D004820 1.5e-08 63.2 58 48.3
Os07g0602200 Oryza sativa ssp. japonica HOM05D001053 ORTHO05D004820 1.5e-08 63.2 46 56.5
TPR.G2048 Trifolium pratense HOM05D001053 ORTHO05D004820 1.5e-08 63.2 49 55.1
Potri.004G092900 Populus trichocarpa HOM05D001053 ORTHO05D004820 1.9e-08 62.8 63 49.2
Sabra04G0062400 Salix brachista HOM05D001053 ORTHO05D004820 1.9e-08 62.8 74 47.3
CsaV3_1G002870 Cucumis sativus L. HOM05D001053 ORTHO05D004820 2.5e-08 62.4 44 59.1
Lj5C103T5 Lonicera japonica HOM05D001053 ORTHO05D004820 3.3e-08 62.0 43 60.5
SEGI_24328 Sequoiadendron giganteum HOM05D001053 ORTHO05D004820 3.3e-08 62.0 65 47.7
VMungo1215G0855 Vigna mungo HOM05D001053 ORTHO05D004820 3.3e-08 62.0 55 50.9
Eucgr.L02064 Eucalyptus grandis HOM05D001053 ORTHO05D004820 4.3e-08 61.6 49 51.0
Nitab4.5_0001485g0180 Nicotiana tabacum HOM05D001053 ORTHO05D004820 5.7e-08 61.2 47 55.3
Psat0s3618g0040 Pisum sativum HOM05D001053 ORTHO05D004820 5.7e-08 61.2 48 58.3
unitig_26.g9658 Utricularia gibba HOM05D001053 ORTHO05D004820 5.7e-08 61.2 66 56.1
ECA232G4674 Erigeron canadensis HOM05D001053 ORTHO05D004820 7.4e-08 60.8 48 54.2
arahy.Tifrunner.gnm1.ann1.T7KHNQ Arachis hypogaea HOM05D001053 ORTHO05D004820 9.7e-08 60.5 48 58.3
arahy.Tifrunner.gnm1.ann1.ZD7DCY Arachis hypogaea HOM05D001053 ORTHO05D004820 9.7e-08 60.5 48 58.3
Zm00001eb108570 Zea mays HOM05D001053 ORTHO05D004820 9.7e-08 60.5 52 53.8
vmacro17607 Vaccinium macrocarpon HOM05D001053 ORTHO05D004820 1.7e-07 59.7 47 53.2
Ca_21779_v3 Cicer arietinum L. HOM05D001053 ORTHO05D004820 2.2e-07 59.3 55 49.1
Haze_07717 Corylus avellana HOM05D001053 ORTHO05D004820 2.8e-07 58.9 68 47.1
CAN.G1228.29 Capsicum annuum HOM05D001053 ORTHO05D004820 4.8e-07 58.2 73 42.5
Manes.06G085100 Manihot esculenta HOM05D001053 ORTHO05D004820 4.8e-07 58.2 63 47.6
Cc00_g07600 Coffea canephora HOM05D001053 ORTHO05D004820 6.3e-07 57.8 48 56.2
VMungo1215G2334 Vigna mungo HOM05D001053 ORTHO05D021119 6.3e-07 57.8 62 45.2
BcaC04g23464 Brassica carinata HOM05D001053 ORTHO05D004820 1.1e-06 57.0 34 73.5
DCAR_011558 Daucus carota HOM05D001053 ORTHO05D004820 1.1e-06 57.0 52 53.8
Lalb_Chr12g0197171 Lupinus albus HOM05D001053 ORTHO05D004820 4.1e-06 55.1 48 50.0
Migut.I00311 Erythranthe guttata HOM05D001053 ORTHO05D004820 9.1e-06 53.9 52 46.2


User provided reference genes

Program Settings