Gene: Carub.0008s2174
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0008s2174
- Transcript Identifier Carub.0008s2174.1
- Gene Type Coding gene
- Location scaffold_8 : 10828119-10831905 : negative
Gene Family Information
- ID HOM05D001053
- #Genes/#Species 576/99
- Phylogenetic origin
- ID ORTHO05D004820
- #Genes/#Species 170/95
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id Carub.0008s2174.v1.1
- pacid 39252784
- synonym Carubv10026118m.g
Descriptions
- Description K11407 - histone deacetylase 6 (HDAC6)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048510 | ISO | PLAZA Integrative Orthology | regulation of timing of transition from vegetative to reproductive phase | AT5G61060 |
| GO:0016575 | ISO | PLAZA Integrative Orthology | histone deacetylation | AT5G61060 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G61060 |
| GO:0004407 | ISO | PLAZA Integrative Orthology | histone deacetylase activity | AT5G61060 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G61060 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G61060 |
| GO:0000118 | ISO | PLAZA Integrative Orthology | histone deacetylase complex | AT5G61060 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.3.2.1.2 | Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-II histone deacetylase |