Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 5.5e-173 610.9 315 100.0
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 8.7e-155 550.4 315 91.7
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 9.4e-149 530.4 316 89.6
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 2.1e-148 529.3 315 89.2
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 2.6e-146 522.3 315 88.9
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 1.7e-145 519.6 315 86.3
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 3.7e-145 518.5 315 86.0
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 4.1e-144 515.0 315 86.3
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 2.6e-143 512.3 315 85.7
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 4.2e-141 505.0 316 85.4
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 5.5e-141 504.6 315 86.3
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 7.2e-133 477.6 317 81.1
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 6.1e-132 474.6 315 81.3
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 6.8e-123 444.5 318 75.5
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.8e-107 393.3 313 73.2
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 2.4e-104 382.9 316 66.5
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 7.0e-104 381.3 317 66.6
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 4.6e-103 378.6 329 66.0
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 3.0e-102 375.9 236 84.7
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 3.0e-102 375.9 246 76.4
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 3.3e-101 372.5 324 65.1
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 2.8e-100 369.4 325 63.1
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 1.8e-99 366.7 252 71.8
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 2.0e-98 363.2 246 74.8
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 2.6e-98 362.8 320 64.1
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 2.6e-98 362.8 311 65.9
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.3e-97 360.5 321 62.0
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 1.3e-97 360.5 322 63.7
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 2.9e-97 359.4 244 75.4
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 3.7e-97 359.0 238 76.9
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 1.1e-96 357.5 247 72.5
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 1.9e-96 356.7 305 63.6
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 1.9e-96 356.7 306 63.7
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 2.4e-96 356.3 248 72.2
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 4.1e-96 355.5 328 62.2
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 7.0e-96 354.8 244 73.8
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 1.2e-95 354.0 316 62.7
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 2.7e-95 352.8 233 74.7
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.7e-95 352.8 317 63.4
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 1.0e-94 350.9 306 62.1
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 2.3e-94 349.7 317 63.1
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 3.0e-94 349.4 316 63.9
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 3.0e-94 349.4 338 60.4
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.0e-94 349.4 316 60.8
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 5.0e-94 348.6 298 64.4
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 2.5e-93 346.3 238 73.9
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 3.3e-93 345.9 316 60.4
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 4.3e-93 345.5 257 69.3
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 5.6e-93 345.1 234 75.2
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 7.3e-93 344.7 236 79.2
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 7.3e-93 344.7 239 70.7
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 1.6e-92 343.6 316 59.5
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 6.2e-92 341.7 303 62.4
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.4e-91 340.5 325 61.2
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.8e-91 340.1 301 62.1
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 3.1e-91 339.3 236 78.8
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 3.1e-91 339.3 326 60.7
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 5.2e-91 338.6 280 65.0
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 5.2e-91 338.6 318 61.9
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 6.8e-91 338.2 244 70.1
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 6.8e-91 338.2 294 60.9
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 8.9e-91 337.8 256 68.4
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 8.9e-91 337.8 243 72.0
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.2e-90 337.4 256 68.4
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.0e-90 336.7 210 83.8
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 2.6e-90 336.3 243 68.3
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 5.8e-90 335.1 256 69.9
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 5.8e-90 335.1 323 57.0
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 7.5e-90 334.7 311 60.5
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 9.9e-90 334.3 310 58.4
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 9.9e-90 334.3 290 63.4
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.3e-89 334.0 246 69.9
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 2.9e-89 332.8 241 68.5
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.7e-89 332.4 255 67.1
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 3.7e-89 332.4 242 69.0
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 4.9e-89 332.0 314 59.6
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.1e-88 330.9 314 59.6
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.1e-88 330.9 314 58.9
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 1.9e-88 330.1 315 60.0
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 3.2e-88 329.3 241 68.9
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 4.1e-88 328.9 241 68.5
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 5.4e-88 328.6 281 62.6
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 5.4e-88 328.6 233 70.4
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 9.2e-88 327.8 238 68.5
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 2.7e-87 326.2 323 57.6
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.7e-87 326.2 319 58.9
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 4.6e-87 325.5 297 61.3
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 5.1e-86 322.0 311 57.9
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 8.6e-86 321.2 226 70.4
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 7.3e-85 318.2 294 59.2
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 4.7e-84 315.5 248 68.1
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 1.4e-83 313.9 303 59.4
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 4.0e-83 312.4 284 65.1
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 8.9e-83 311.2 228 67.1
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.2e-82 310.8 222 72.5
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.6e-82 309.7 241 63.1
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 4.9e-81 305.4 254 63.4
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 8.4e-81 304.7 207 79.2
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 8.4e-81 304.7 207 79.2
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.1e-80 304.3 308 55.2
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 6.0e-79 298.5 255 62.7
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.5e-77 293.1 312 52.9
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.3e-77 292.7 222 67.6
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 4.3e-77 292.4 314 52.5
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 6.2e-76 288.5 217 66.4
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 5.8e-74 282.0 213 66.7
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 9.3e-72 274.6 318 50.9
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 2.1e-68 263.5 266 53.8
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 3.6e-68 262.7 253 53.8
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.7e-65 253.8 254 54.3
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.0e-62 244.6 301 49.5
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 6.7e-62 241.9 244 52.5
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 6.7e-62 241.9 282 50.0
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.5e-61 240.0 296 48.3
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 1.3e-60 237.7 189 68.3
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 2.6e-58 229.9 230 60.0
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 1.3e-57 227.6 192 62.0
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 4.2e-56 222.6 218 51.4
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.2e-55 221.1 171 66.7
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 4.0e-51 206.1 229 52.0
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.6e-50 201.8 174 60.3
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 5.5e-48 195.7 155 71.0
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.5e-33 145.2 125 61.6
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.5e-32 142.5 193 46.1
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.2e-31 141.4 211 40.8
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 2.7e-31 140.2 236 38.1
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 1.5e-29 134.4 70 92.9
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 2.7e-23 113.6 122 59.8
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 4.7e-23 112.8 221 30.8
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.3e-20 104.8 73 69.9
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.0e-17 92.8 89 52.8
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 4.2e-16 89.7 47 91.5
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 1.3e-12 78.2 81 55.6
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.8e-12 77.0 46 78.3
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 2.8e-12 77.0 77 55.8
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 2.9e-09 67.0 48 66.7
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 8.5e-09 65.5 70 54.3
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 1.5e-08 64.7 45 71.1
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 4.0e-06 56.6 50 52.0


User provided reference genes

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