Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 3.5e-175 618.2 319 100.0
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 6.8e-155 550.8 321 89.1
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 6.8e-155 550.8 321 89.1
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 4.4e-154 548.1 321 88.5
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 1.7e-150 536.2 346 82.4
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 2.7e-143 512.3 318 85.5
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 5.0e-142 508.1 322 82.0
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 1.9e-141 506.1 320 82.2
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 1.6e-140 503.1 321 81.6
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 1.3e-134 483.4 320 78.8
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 6.4e-113 411.4 327 69.7
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 5.4e-104 381.7 330 64.5
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 1.9e-80 303.5 329 52.9
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 7.2e-80 301.6 327 51.7
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 3.3e-77 292.7 330 51.8
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 4.8e-76 288.9 330 50.6
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 1.4e-75 287.3 381 45.4
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 4.1e-75 285.8 320 51.9
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 2.6e-74 283.1 334 49.4
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 7.7e-74 281.6 331 48.6
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 1.3e-73 280.8 308 51.3
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 3.8e-73 279.3 323 49.2
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 1.4e-72 277.3 333 48.9
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 3.2e-72 276.2 325 51.4
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 3.2e-72 276.2 334 47.9
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 5.5e-72 275.4 325 47.7
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 7.2e-72 275.0 331 49.8
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 1.2e-71 274.2 334 49.7
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 2.7e-71 273.1 325 50.8
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 2.7e-71 273.1 319 50.5
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 1.0e-70 271.2 330 47.0
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 1.0e-70 271.2 325 47.4
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 1.0e-70 271.2 322 48.1
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 2.3e-70 270.0 319 50.2
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 3.9e-70 269.2 323 48.3
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 5.1e-70 268.9 331 49.8
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 8.8e-70 268.1 331 45.9
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 1.1e-69 267.7 336 46.4
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 1.1e-69 267.7 312 49.7
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 5.7e-69 265.4 311 48.9
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 5.7e-69 265.4 311 48.6
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 2.2e-68 263.5 326 48.8
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 3.7e-68 262.7 330 45.8
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 6.3e-68 261.9 323 46.7
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 1.1e-67 261.2 334 47.0
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 1.4e-67 260.8 319 48.3
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 1.4e-67 260.8 326 46.0
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 1.8e-67 260.4 327 48.9
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 1.8e-67 260.4 316 49.1
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 2.4e-67 260.0 318 47.5
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 2.4e-67 260.0 313 47.9
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 3.1e-67 259.6 317 49.8
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 2.0e-66 256.9 353 45.6
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 2.6e-66 256.5 327 46.8
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 4.5e-66 255.8 329 46.8
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 7.7e-66 255.0 311 47.6
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 1.0e-65 254.6 332 46.4
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 1.3e-65 254.2 334 47.0
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.7e-65 253.8 284 50.0
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 2.2e-65 253.4 337 46.3
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 2.2e-65 253.4 315 47.3
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 2.9e-65 253.1 328 47.3
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 1.5e-64 250.8 333 44.4
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 3.2e-64 249.6 323 48.6
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 4.7e-63 245.7 332 46.1
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 6.1e-63 245.4 323 44.0
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 6.1e-63 245.4 337 44.2
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 8.0e-63 245.0 325 45.5
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.4e-62 244.2 284 48.9
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 1.5e-61 240.7 341 42.5
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 1.5e-61 240.7 278 49.6
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 2.0e-61 240.4 324 45.4
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 2.8e-60 236.5 333 44.1
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 4.8e-60 235.7 315 43.5
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 6.3e-60 235.3 277 48.0
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 6.3e-60 235.3 295 47.8
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 1.1e-59 234.6 279 48.4
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.1e-59 234.6 279 48.4
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.4e-59 234.2 301 45.5
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 5.3e-59 232.3 345 43.8
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 1.6e-58 230.7 309 44.7
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 5.0e-57 225.7 212 53.8
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 8.5e-57 224.9 333 41.4
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 8.5e-57 224.9 253 51.8
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 2.1e-55 220.3 217 53.0
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 2.1e-55 220.3 346 39.6
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 2.7e-55 219.9 214 51.9
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 1.0e-54 218.0 203 53.2
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 6.8e-54 215.3 310 40.6
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 2.2e-52 210.3 211 52.1
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 1.1e-51 208.0 309 42.1
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 1.4e-51 207.6 208 51.4
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 7.0e-51 205.3 286 43.4
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 1.6e-50 204.1 310 41.3
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 3.5e-50 203.0 227 47.1
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 4.5e-50 202.6 265 43.4
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 4.5e-50 202.6 286 43.4
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 3.8e-49 199.5 332 39.2
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 2.5e-48 196.8 274 42.7
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 5.5e-48 195.7 264 43.6
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 7.2e-48 195.3 310 38.7
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 9.4e-48 194.9 262 44.3
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.6e-47 194.1 266 43.2
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 2.7e-47 193.4 271 43.2
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 4.9e-44 182.6 198 49.5
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.1e-43 179.5 197 48.7
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 4.1e-43 179.5 178 47.8
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 4.1e-43 179.5 196 48.0
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 5.0e-41 172.6 196 47.4
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 1.1e-40 171.4 200 45.5
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.8e-39 166.8 196 46.9
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 8.0e-39 165.2 196 46.9
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 8.0e-39 165.2 259 38.2
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 1.0e-33 148.3 198 38.9
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 2.1e-31 140.6 139 51.1
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.1e-30 136.7 134 52.2
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 3.1e-30 136.7 150 47.3
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 7.0e-27 125.6 127 48.8
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 1.2e-26 124.8 192 45.3
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 4.3e-24 116.3 185 38.9
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 6.2e-23 112.5 194 40.2
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 4.6e-18 96.3 204 35.8
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 4.3e-16 89.7 86 58.1
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 5.8e-13 79.3 202 31.2
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 6.4e-12 75.9 86 50.0


User provided reference genes

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