Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 5.2e-99 364.4 184 100.0
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.3e-94 349.7 184 95.1
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 3.6e-92 341.7 184 91.8
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 7.0e-88 327.4 183 86.3
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 7.0e-88 327.4 184 87.5
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.6e-87 326.2 182 87.4
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.6e-87 326.2 182 87.4
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.6e-87 326.2 182 87.4
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.0e-87 325.9 184 87.0
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 4.6e-87 324.7 193 85.5
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.3e-86 322.4 184 87.0
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.5e-85 319.7 184 85.9
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.5e-85 319.7 184 85.9
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 2.5e-85 318.9 180 85.6
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 7.3e-85 317.4 182 84.1
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 7.3e-85 317.4 182 84.1
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.6e-84 316.2 180 86.1
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 5.2e-83 311.2 185 84.3
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 2.0e-82 309.3 177 86.4
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.9e-80 302.8 184 79.3
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.4e-80 302.4 184 78.3
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 4.1e-80 301.6 182 80.2
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 9.2e-80 300.4 184 79.9
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.6e-79 299.7 184 78.3
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 1.6e-79 299.7 184 78.8
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.6e-79 299.7 184 79.3
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 2.7e-79 298.9 184 78.8
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 4.6e-79 298.1 184 77.7
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 7.8e-79 297.4 184 78.3
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 7.8e-79 297.4 184 79.3
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.0e-78 297.0 184 77.7
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.0e-78 297.0 184 77.7
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-78 296.6 184 78.3
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 1.3e-78 296.6 184 79.3
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 2.3e-78 295.8 184 78.8
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 5.1e-78 294.7 184 78.3
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 5.1e-78 294.7 184 77.7
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.9e-77 292.7 178 79.8
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.9e-77 292.7 180 77.2
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.5e-77 292.4 184 77.2
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 2.5e-77 292.4 183 78.1
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 4.3e-77 291.6 184 77.7
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 5.6e-77 291.2 184 77.2
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 7.3e-77 290.8 184 73.9
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-76 290.0 177 79.7
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 2.1e-76 289.3 182 76.4
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.1e-76 289.3 184 73.9
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 2.1e-76 289.3 184 76.1
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 3.6e-76 288.5 182 75.8
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 6.2e-76 287.7 182 75.8
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 1.1e-75 287.0 184 76.1
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.8e-75 286.2 184 76.1
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.8e-75 286.2 183 77.0
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 2.3e-75 285.8 184 72.8
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.3e-75 285.8 184 75.5
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.3e-75 285.8 184 75.5
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 3.1e-75 285.4 182 75.8
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 6.8e-75 284.3 180 76.7
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 8.9e-75 283.9 184 73.9
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 1.2e-74 283.5 184 71.7
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.2e-74 283.5 184 71.7
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.2e-74 283.5 184 71.7
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 1.2e-74 283.5 182 73.6
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.0e-74 282.7 184 75.0
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.0e-74 282.7 184 74.5
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.0e-74 282.7 184 74.5
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 2.0e-74 282.7 184 73.4
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 2.0e-74 282.7 184 75.5
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 3.4e-74 282.0 182 72.5
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.4e-74 281.6 184 72.3
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 4.4e-74 281.6 183 76.0
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 4.4e-74 281.6 184 72.3
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 5.8e-74 281.2 184 72.8
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 7.6e-74 280.8 178 76.4
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 7.6e-74 280.8 178 75.3
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.7e-73 279.6 184 72.8
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.7e-73 279.6 184 73.4
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 2.2e-73 279.3 182 72.0
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.9e-73 278.9 177 74.0
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.7e-73 278.5 184 72.3
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 6.4e-73 277.7 184 71.7
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 6.4e-73 277.7 179 75.4
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.4e-72 276.6 182 72.0
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 3.2e-72 275.4 184 72.3
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 4.1e-72 275.0 182 73.1
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 5.4e-72 274.6 182 72.5
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 7.1e-72 274.2 182 69.8
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 7.1e-72 274.2 182 69.8
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 9.2e-72 273.9 180 70.6
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.2e-72 273.9 182 69.8
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.6e-71 273.1 181 72.4
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.6e-71 273.1 182 72.0
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 2.1e-71 272.7 182 71.4
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 2.7e-71 272.3 182 72.5
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 2.7e-71 272.3 179 71.5
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 2.7e-71 272.3 182 72.0
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 3.5e-71 271.9 180 72.2
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 1.0e-70 270.4 180 72.2
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.0e-70 270.4 177 72.9
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 3.0e-70 268.9 180 76.1
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 3.0e-70 268.9 182 68.7
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.9e-70 268.5 182 70.9
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 3.9e-70 268.5 178 70.8
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 5.1e-70 268.1 179 72.6
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 8.6e-70 267.3 178 70.8
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.1e-69 266.9 182 70.3
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 1.5e-69 266.5 182 68.7
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.5e-69 265.8 177 72.3
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 5.6e-69 264.6 185 68.6
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 2.1e-68 262.7 175 70.3
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 2.8e-68 262.3 170 74.1
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 4.7e-68 261.5 184 69.6
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 6.2e-68 261.2 185 68.1
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 8.1e-68 260.8 182 69.8
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 1.1e-67 260.4 184 69.6
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 1.8e-67 259.6 179 68.2
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 2.4e-67 259.2 182 68.7
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 8.9e-67 257.3 178 69.7
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 1.5e-66 256.5 182 73.1
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 1.5e-66 256.5 185 66.5
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.0e-66 256.1 185 67.0
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 2.9e-65 252.3 182 65.4
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 4.9e-65 251.5 179 67.6
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 6.4e-65 251.1 184 65.2
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 4.2e-64 248.4 180 70.0
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 2.3e-62 242.7 177 67.8
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 2.3e-62 242.7 179 65.9
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 3.0e-62 242.3 179 65.9
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.5e-61 240.0 186 62.9
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 2.8e-60 235.7 184 64.1
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 4.8e-60 235.0 180 64.4
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.3e-54 216.1 176 63.1
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 1.6e-52 209.9 165 66.1
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 1.6e-47 193.4 184 55.4
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 5.6e-45 184.9 115 76.5
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 4.0e-43 178.7 200 49.0
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.4e-42 175.6 121 66.9
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 3.5e-39 165.6 159 53.5
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 8.7e-38 161.0 183 40.4
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 5.8e-34 148.3 106 72.6
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.4e-22 110.5 109 54.1
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.1e-21 107.5 76 68.4
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 7.7e-18 94.7 52 84.6
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 7.2e-16 88.2 59 72.9
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 9.4e-16 87.8 164 33.5
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 1.6e-15 87.0 55 76.4
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.8e-11 73.6 38 92.1


User provided reference genes

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