Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g16230 Schrenkiella parvula HOM05D005515 ORTHO05D006620 6.3e-46 187.6 133 100.0
Thhalv10005161m.g Eutrema salsugineum HOM05D005515 ORTHO05D006620 1.1e-26 123.6 114 87.7
AL5G16230 Arabidopsis lyrata HOM05D005515 ORTHO05D006620 2.1e-25 119.4 118 75.4
BcaC04g23917 Brassica carinata HOM05D005515 ORTHO05D006620 3.6e-25 118.6 115 87.0
Carub.0005s0534 Capsella rubella HOM05D005515 ORTHO05D006620 4.7e-25 118.2 113 89.4
CARHR148320 Cardamine hirsuta HOM05D005515 ORTHO05D006620 4.7e-25 118.2 112 71.4
BolC9t53269H Brassica oleracea HOM05D005515 ORTHO05D006620 1.8e-24 116.3 112 88.4
AT3G27100 Arabidopsis thaliana HOM05D005515 ORTHO05D006620 8.8e-24 114.0 113 87.6
BraA06t27074Z Brassica rapa HOM05D005515 ORTHO05D006620 8.8e-24 114.0 119 83.2
A09p03280 Brassica napus HOM05D005515 ORTHO05D006620 2.6e-23 112.5 112 85.7
Aa31LG2G5500 Aethionema arabicum HOM05D005515 ORTHO05D006620 1.7e-22 109.8 112 84.8
C07p36160 Brassica napus HOM05D005515 ORTHO05D006620 2.8e-22 109.0 107 88.8
THA.LOC104823981 Tarenaya hassleriana HOM05D005515 ORTHO05D006620 3.1e-21 105.5 112 75.9
BolC7t44132H Brassica oleracea HOM05D005515 ORTHO05D006620 8.6e-19 97.4 109 62.4
Lalb_Chr22g0360381 Lupinus albus HOM05D005515 ORTHO05D006620 2.5e-18 95.9 112 66.1
Aqoxy7G00951 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.2e-17 93.6 113 62.8
Glyma.16G056700 Glycine max HOM05D005515 ORTHO05D006620 1.2e-17 93.6 112 65.2
Aqoxy2G02223 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.6e-17 93.2 113 62.8
Aqoxy5G03385 Aquilegia oxysepala HOM05D005515 ORTHO05D006620 1.6e-17 93.2 110 64.5
Atru.chr11.2315 Acer truncatum HOM05D005515 ORTHO05D006620 4.7e-17 91.7 112 65.2
arahy.Tifrunner.gnm1.ann1.W7YL8X Arachis hypogaea HOM05D005515 ORTHO05D006620 4.7e-17 91.7 112 66.1
arahy.Tifrunner.gnm1.ann1.Y4DWZG Arachis hypogaea HOM05D005515 ORTHO05D006620 4.7e-17 91.7 112 66.1
Lj1g0017105 Lotus japonicus HOM05D005515 ORTHO05D006620 4.7e-17 91.7 112 62.5
Peaxi162Scf00881g00228 Petunia axillaris HOM05D005515 ORTHO05D006620 6.1e-17 91.3 116 66.4
Hund04339 Selenicereus undatus HOM05D005515 ORTHO05D006620 6.1e-17 91.3 112 63.4
Os01g0920200 Oryza sativa ssp. japonica HOM05D005515 ORTHO05D006620 8.0e-17 90.9 110 63.6
Phvul.001G093800 Phaseolus vulgaris HOM05D005515 ORTHO05D006620 8.0e-17 90.9 112 63.4
TAR374G0204 Trochodendron aralioides HOM05D005515 ORTHO05D006620 8.0e-17 90.9 113 63.7
Dinv25661 Davidia involucrata HOM05D005515 ORTHO05D006620 1.0e-16 90.5 112 54.5
Ciclev10017250m.g Citrus clementina HOM05D005515 ORTHO05D006620 2.3e-16 89.4 112 64.3
Glyma.19G091000 Glycine max HOM05D005515 ORTHO05D006620 3.0e-16 89.0 112 59.8
TAR622G0361 Trochodendron aralioides HOM05D005515 ORTHO05D006620 3.0e-16 89.0 112 63.4
Eucgr.I01648 Eucalyptus grandis HOM05D005515 ORTHO05D006620 4.0e-16 88.6 110 63.6
PGR102G1194 Punica granatum HOM05D005515 ORTHO05D006620 5.2e-16 88.2 111 69.4
HPP92_000347 Vanilla planifolia HOM05D005515 ORTHO05D006620 6.8e-16 87.8 113 60.2
Haze_14873 Corylus avellana HOM05D005515 ORTHO05D006620 8.9e-16 87.4 112 50.0
Migut.K01462 Erythranthe guttata HOM05D005515 ORTHO05D006620 8.9e-16 87.4 114 58.8
Psat3g175680 Pisum sativum HOM05D005515 ORTHO05D006620 8.9e-16 87.4 112 46.4
Sc07g0003980 Simmondsia chinensis HOM05D005515 ORTHO05D006620 8.9e-16 87.4 114 61.4
TPR.G38294 Trifolium pratense HOM05D005515 ORTHO05D006620 8.9e-16 87.4 112 46.4
MSTRG.15568 Avicennia marina HOM05D005515 ORTHO05D006620 1.5e-15 86.7 115 64.3
PSO063G5856 Papaver somniferum HOM05D005515 ORTHO05D006620 1.5e-15 86.7 110 63.6
PSO782G3173 Papaver somniferum HOM05D005515 ORTHO05D006620 1.5e-15 86.7 110 63.6
Dinv10962 Davidia involucrata HOM05D000504 ORTHO05D006620 2.0e-15 86.3 112 64.3
MD09G1011100 Malus domestica HOM05D005515 ORTHO05D006620 2.0e-15 86.3 112 54.5
Rhsim10G0006500 Rhododendron simsii HOM05D005515 ORTHO05D006620 2.0e-15 86.3 112 59.8
SEGI_35944 Sequoiadendron giganteum HOM05D005515 ORTHO05D006620 2.0e-15 86.3 112 62.5
A06p41490 Brassica napus HOM05D005515 ORTHO05D006620 2.6e-15 85.9 120 61.7
BraA09t35966Z Brassica rapa HOM05D005515 ORTHO05D006620 3.4e-15 85.5 108 78.7
CSS0007323 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 3.4e-15 85.5 112 45.5
CAN.G1300.5 Capsicum annuum HOM05D005515 ORTHO05D006620 3.4e-15 85.5 112 69.6
Oeu041666.1 Olea europaea HOM05D005515 ORTHO05D006620 3.4e-15 85.5 112 63.4
Potri.001G330400 Populus trichocarpa HOM05D005515 ORTHO05D006620 3.4e-15 85.5 112 56.2
AUR62017824 Chenopodium quinoa HOM05D005515 ORTHO05D006620 4.4e-15 85.1 112 45.5
Cc11_g16850 Coffea canephora HOM05D005515 ORTHO05D006620 4.4e-15 85.1 113 64.6
Potri.017G069200 Populus trichocarpa HOM05D005515 ORTHO05D006620 4.4e-15 85.1 113 60.2
Medtr7g033490 Medicago truncatula HOM05D005515 ORTHO05D006620 5.7e-15 84.7 112 47.3
Nitab4.5_0003376g0030 Nicotiana tabacum HOM05D005515 ORTHO05D006620 5.7e-15 84.7 111 65.8
Nitab4.5_0008640g0020 Nicotiana tabacum HOM05D005515 ORTHO05D006620 5.7e-15 84.7 111 65.8
Gorai.012G087000 Gossypium raimondii HOM05D005515 ORTHO05D006620 7.5e-15 84.3 113 65.5
CANSAT11G1216 Cannabis sativa HOM05D005515 ORTHO05D006620 9.8e-15 84.0 112 52.7
CiPaw.04G036400 Carya illinoinensis HOM05D005515 ORTHO05D006620 9.8e-15 84.0 112 43.8
Gohir.D04G077100 Gossypium hirsutum HOM05D005515 ORTHO05D006620 9.8e-15 84.0 112 66.1
Manes.12G012000 Manihot esculenta HOM05D005515 ORTHO05D006620 9.8e-15 84.0 112 61.6
FAN05G2195 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.3e-14 83.6 115 53.9
Gohir.A05G338800 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.3e-14 83.6 112 61.6
TWI36G0725 Tripterygium wilfordii HOM05D005515 ORTHO05D006620 1.3e-14 83.6 112 60.7
Gohir.D07G235400 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.7e-14 83.2 112 63.4
GSVIVG01033096001 Vitis vinifera HOM05D005515 ORTHO05D006620 1.7e-14 83.2 115 60.0
EL10Ac6g15358 Beta vulgaris HOM05D005515 ORTHO05D006620 2.2e-14 82.8 112 43.8
CsaV3_6G032220 Cucumis sativus L. HOM05D005515 ORTHO05D006620 2.2e-14 82.8 112 56.2
FAN09G0415 Fragaria x ananassa HOM05D005515 ORTHO05D006620 2.2e-14 82.8 131 48.9
Solyc02g068110.4 Solanum lycopersicum HOM05D005515 ORTHO05D006620 2.8e-14 82.4 110 64.5
ATR1098G146 Amborella trichopoda HOM05D005515 ORTHO05D006620 3.7e-14 82.0 122 59.0
Lsat_1_v5_gn_8_147620 Lactuca sativa HOM05D005515 ORTHO05D006620 3.7e-14 82.0 113 61.9
Thecc.04G035700 Theobroma cacao HOM05D005515 ORTHO05D006620 6.3e-14 81.3 112 63.4
Mapoly0005s0063 Marchantia polymorpha HOM05D005515 ORTHO05D006620 8.3e-14 80.9 112 61.6
Prupe.3G305900 Prunus persica HOM05D005515 ORTHO05D006620 8.3e-14 80.9 112 59.8
Zm00001eb364510 Zea mays HOM05D005515 ORTHO05D006620 8.3e-14 80.9 110 46.4
Gohir.A07G228200 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.1e-13 80.5 112 62.5
Gorai.001G271200 Gossypium raimondii HOM05D005515 ORTHO05D006620 1.1e-13 80.5 112 62.5
Manes.15G160700 Manihot esculenta HOM05D005515 ORTHO05D006620 1.4e-13 80.1 112 60.7
FvH4_6g53480 Fragaria vesca HOM05D005515 ORTHO05D006620 1.8e-13 79.7 112 50.0
FAN02G1022 Fragaria x ananassa HOM05D005515 ORTHO05D006620 1.8e-13 79.7 112 52.7
Pp3c4_1860 Physcomitrium patens HOM05D005515 ORTHO05D006620 1.8e-13 79.7 108 61.1
Atru.chr6.2567 Acer truncatum HOM05D005515 ORTHO05D006620 3.2e-13 79.0 113 58.4
Pp3c12_14240 Physcomitrium patens HOM05D005515 ORTHO05D006620 3.2e-13 79.0 108 60.2
Duzib264G0697 Durio zibethinus HOM05D005515 ORTHO05D006620 4.1e-13 78.6 112 62.5
BcaB04g19426 Brassica carinata HOM05D005515 ORTHO05D006620 9.2e-13 77.4 80 86.2
Duzib147G1212 Durio zibethinus HOM05D005515 ORTHO05D006620 9.2e-13 77.4 112 61.6
Sed0013471 Sechium edule HOM05D005515 ORTHO05D006620 2.7e-12 75.9 112 41.1
MSTRG.7999 Avicennia marina HOM05D005515 ORTHO05D006620 1.7e-11 73.2 112 58.9
Migut.K00729 Erythranthe guttata HOM05D005515 ORTHO05D006620 1.7e-11 73.2 112 37.5
Duzib268G1731 Durio zibethinus HOM05D005515 ORTHO05D006620 2.9e-11 72.4 114 41.2
Zm00001eb143260 Zea mays HOM05D005515 ORTHO05D006620 3.9e-11 72.0 110 43.6
Pp3c8_2660 Physcomitrium patens HOM05D005515 ORTHO05D006620 6.6e-11 71.2 112 43.8
SMO367G0376 Selaginella moellendorffii HOM05D005515 ORTHO05D006620 1.1e-10 70.5 102 55.9
Duzib187G1157 Durio zibethinus HOM05D005515 ORTHO05D006620 2.5e-10 69.3 112 57.1
C09p03480 Brassica napus HOM05D005515 ORTHO05D006620 2.8e-09 65.9 38 86.8
unitig_8.g2909 Utricularia gibba HOM05D005515 ORTHO05D006620 4.7e-09 65.1 114 57.0
MD00G1139400 Malus domestica HOM05D005515 ORTHO05D006620 6.1e-09 64.7 80 46.2
Haze_12412 Corylus avellana HOM05D000048 ORTHO05D000445 1.4e-08 63.5 112 38.4
Gohir.A05G310700 Gossypium hirsutum HOM05D005515 ORTHO05D006620 1.8e-08 63.2 96 38.5
Actinidia05921 Actinidia chinensis HOM05D005515 ORTHO05D006620 2.3e-08 62.8 111 37.8
MELO3C011459.2 Cucumis melo HOM05D005515 ORTHO05D006620 2.3e-08 62.8 84 54.8
Gorai.009G332600 Gossypium raimondii HOM05D005515 ORTHO05D006620 2.3e-08 62.8 117 35.0
Cfa009365 Carpinus fangiana HOM05D000048 ORTHO05D000445 5.2e-08 61.6 112 53.6
Actinidia36201 Actinidia chinensis HOM05D005515 ORTHO05D006620 8.9e-08 60.8 84 58.3
PGSC0003DMG401006926 Solanum tuberosum HOM05D005515 ORTHO05D006620 8.9e-08 60.8 91 63.7
VMungo1383G1573 Vigna mungo HOM05D005515 ORTHO05D006620 2.6e-07 59.3 38 73.7
AagrBONN_evm.TU.Sc2ySwM_117.47 Anthoceros agrestis HOM05D005515 ORTHO05D006620 3.4e-07 58.9 84 40.5
RcHm_v2.0_Chr2g0175521 Rosa chinensis HOM05D005515 ORTHO05D006620 4.4e-07 58.5 38 71.1
QL02p071462 Quercus lobata HOM05D005515 ORTHO05D006620 5.8e-07 58.2 38 71.1
CSS0037273 Camellia sinensis var. sinensis HOM05D005515 ORTHO05D006620 9.8e-07 57.4 38 68.4
SGA_v2.0_scaffold154G37170 Striga asiatica HOM05D005515 ORTHO05D006620 9.8e-07 57.4 110 55.5
HanXRQChr12g0385431 Helianthus annuus HOM05D005515 ORTHO05D006620 1.7e-06 56.6 38 68.4
Sabra16G0211700 Salix brachista HOM05D005515 ORTHO05D006620 1.7e-06 56.6 38 68.4
MCO13G114 Micromonas commoda HOM05D005515 ORTHO05D006620 2.2e-06 56.2 98 58.2
Cpa.g.sc43.50 Carica papaya HOM05D005515 ORTHO05D006620 2.9e-06 55.8 88 64.8
vmacro05955 Vaccinium macrocarpon HOM05D005515 ORTHO05D006620 4.9e-06 55.1 38 65.8


User provided reference genes

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