Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 7.9e-126 453.8 224 100.0
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 4.3e-47 192.2 237 48.9
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.8e-46 189.5 230 50.0
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 4.2e-42 175.6 214 52.3
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 7.9e-41 171.4 231 47.6
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 2.3e-40 169.9 219 48.9
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 3.3e-39 166.0 214 48.1
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 4.3e-39 165.6 204 51.0
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 7.4e-39 164.9 215 47.9
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 1.3e-38 164.1 225 46.7
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 2.1e-38 163.3 215 48.4
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 2.8e-38 162.9 215 47.0
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.5e-36 155.6 187 50.8
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 4.5e-36 155.6 213 47.4
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.3e-30 137.5 203 42.4
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 8.2e-22 108.2 231 34.6
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 3.2e-18 96.3 180 37.2
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 4.2e-18 95.9 238 31.5
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.7e-17 93.2 219 33.3
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 6.1e-17 92.0 211 32.2
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 1.8e-16 90.5 364 26.9
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.3e-16 90.1 228 29.8
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 8.7e-16 88.2 231 32.5
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.5e-15 87.4 242 30.2
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.9e-15 87.0 244 30.3
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 3.3e-15 86.3 231 32.5
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 4.3e-15 85.9 240 30.8
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 7.4e-15 85.1 230 31.3
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 1.6e-14 84.0 236 29.7
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 2.8e-14 83.2 248 31.0
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.7e-14 82.8 233 33.0
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.7e-14 82.8 229 31.4
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 3.7e-14 82.8 229 31.4
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 6.3e-14 82.0 203 31.0
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 8.2e-14 81.6 132 40.9
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 8.2e-14 81.6 204 33.3
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.4e-13 80.1 95 44.2
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 3.1e-13 79.7 245 30.2
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 4.1e-13 79.3 232 30.6
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 4.1e-13 79.3 214 32.2
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 9.0e-13 78.2 124 39.5
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 9.0e-13 78.2 207 30.9
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 9.0e-13 78.2 223 30.0
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 1.2e-12 77.8 152 34.9
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.0e-12 77.0 152 34.9
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.0e-12 77.0 152 34.9
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.6e-12 76.6 205 28.8
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 3.4e-12 76.3 216 31.0
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 4.5e-12 75.9 219 31.5
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 5.9e-12 75.5 152 34.2
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 5.9e-12 75.5 152 34.2
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 7.7e-12 75.1 145 35.2
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 7.7e-12 75.1 219 31.5
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 7.7e-12 75.1 210 29.0
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 1.0e-11 74.7 183 32.2
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.3e-11 74.3 40 85.0
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 2.9e-11 73.2 209 29.2
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 2.9e-11 73.2 198 30.8
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 3.8e-11 72.8 242 29.8
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 3.8e-11 72.8 95 43.2
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 5.0e-11 72.4 242 29.3
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.5e-11 71.6 39 79.5
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 1.9e-10 70.5 239 28.5
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 1.9e-10 70.5 239 28.5
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 2.5e-10 70.1 141 33.3
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.5e-10 70.1 213 27.7
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 4.2e-10 69.3 217 27.6
AT4G01340 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 5.5e-10 68.9 90 46.7
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 7.2e-10 68.6 160 30.0
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 7.2e-10 68.6 226 28.3
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.2e-09 67.8 224 26.8
AT4G01335 Arabidopsis thaliana HOM05D001988 ORTHO05D019756 1.6e-09 67.4 49 65.3
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 1.6e-09 67.4 230 27.0
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 2.7e-09 66.6 260 25.0
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 2.7e-09 66.6 238 29.0
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 3.6e-09 66.2 208 28.4
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.6e-09 66.2 181 32.0
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 3.6e-09 66.2 119 35.3
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 4.6e-09 65.9 227 27.3
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 4.6e-09 65.9 216 31.0
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 4.6e-09 65.9 239 26.4
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 6.1e-09 65.5 118 34.7
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 6.1e-09 65.5 118 33.9
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 6.1e-09 65.5 195 30.8
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 7.9e-09 65.1 194 27.3
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 1.4e-08 64.3 184 29.9
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.4e-08 64.3 109 34.9
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.4e-08 64.3 202 28.2
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 1.8e-08 63.9 191 28.8
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 2.3e-08 63.5 193 29.0
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 3.0e-08 63.2 191 31.9
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 3.0e-08 63.2 181 32.6
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 3.9e-08 62.8 201 27.9
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 3.9e-08 62.8 104 36.5
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 3.9e-08 62.8 191 28.8
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 5.1e-08 62.4 104 37.5
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 6.7e-08 62.0 139 31.7
BcaC06g34029 Brassica carinata HOM05D001988 ORTHO05D004985 2.0e-07 60.5 72 45.8
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 4.4e-07 59.3 193 26.9
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 5.7e-07 58.9 124 31.5
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 7.4e-07 58.5 189 28.6
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 7.4e-07 58.5 191 26.7
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 9.7e-07 58.2 230 27.4
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 9.7e-07 58.2 204 27.5
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 2.2e-06 57.0 101 34.7
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 2.8e-06 56.6 127 29.9
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 3.7e-06 56.2 36 69.4
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.8e-06 55.8 108 33.3
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 6.3e-06 55.5 207 28.0
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 8.2e-06 55.1 123 32.5


User provided reference genes

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