Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 4.4e-164 581.3 302 100.0
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 6.2e-158 560.8 302 96.0
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 6.9e-149 530.8 302 91.1
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 1.3e-147 526.6 300 91.3
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 2.9e-147 525.4 301 91.7
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 1.8e-144 516.2 302 88.4
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 1.8e-144 516.2 300 90.7
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 1.8e-144 516.2 300 90.7
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 1.5e-143 513.1 300 89.7
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 9.0e-141 503.8 326 83.1
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.8e-133 479.6 297 86.5
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 2.6e-132 475.7 300 85.3
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 7.9e-129 464.2 302 81.1
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 3.1e-125 452.2 328 75.0
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 4.1e-125 451.8 258 89.1
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 1.4e-117 426.8 299 79.3
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 9.1e-117 424.1 308 74.7
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 4.5e-116 421.8 299 75.3
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.1e-114 417.2 302 74.2
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 1.4e-114 416.8 305 72.8
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.2e-113 413.7 300 74.0
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.7e-113 412.5 300 74.0
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 2.7e-113 412.5 303 71.9
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 3.6e-113 412.1 300 73.7
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 3.6e-113 412.1 299 75.3
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 4.7e-113 411.8 305 71.8
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.8e-112 409.8 301 74.1
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 2.3e-112 409.5 305 72.1
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 3.0e-112 409.1 307 71.7
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 3.9e-112 408.7 310 70.3
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 6.7e-112 407.9 302 73.5
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 6.7e-112 407.9 306 70.6
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 6.7e-112 407.9 306 71.9
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 1.1e-111 407.1 267 82.8
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 3.3e-111 405.6 304 71.1
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 4.4e-111 405.2 308 71.8
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 7.4e-111 404.4 303 70.3
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 7.4e-111 404.4 299 73.2
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 7.4e-111 404.4 300 72.7
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.3e-110 403.7 304 70.1
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.7e-110 403.3 308 70.5
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 2.8e-110 402.5 298 71.1
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 2.8e-110 402.5 304 71.7
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 3.7e-110 402.1 306 71.9
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 8.2e-110 401.0 308 71.4
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 8.2e-110 401.0 298 71.5
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 1.1e-109 400.6 299 71.9
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 2.4e-109 399.4 301 70.4
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 3.1e-109 399.1 305 70.2
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 1.2e-108 397.1 305 69.8
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.2e-108 397.1 300 71.7
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 2.6e-108 396.0 303 70.3
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 4.5e-108 395.2 302 70.9
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 5.9e-108 394.8 312 68.6
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 5.9e-108 394.8 307 70.0
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 1.3e-107 393.7 302 70.5
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 3.8e-107 392.1 335 67.2
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 6.5e-107 391.3 306 69.0
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 1.1e-106 390.6 303 68.3
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 1.5e-106 390.2 297 68.4
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.9e-106 389.8 307 69.1
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.9e-106 389.8 300 69.3
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.9e-106 389.8 303 68.3
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 4.2e-106 388.7 305 69.5
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 2.7e-105 386.0 322 65.5
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 2.7e-105 386.0 321 65.4
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 3.6e-105 385.6 304 68.1
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 4.7e-105 385.2 312 68.6
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 6.1e-105 384.8 315 69.5
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 1.0e-104 384.0 302 69.5
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.4e-104 383.6 294 71.1
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 1.4e-104 383.6 366 60.7
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 4.0e-104 382.1 305 67.2
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 3.7e-102 375.6 320 63.1
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 3.7e-102 375.6 305 67.2
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 2.0e-100 369.8 282 70.2
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 6.5e-99 364.8 354 59.6
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 8.0e-97 357.8 371 55.5
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 3.0e-96 355.9 286 66.8
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 5.2e-96 355.1 297 66.0
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 2.6e-95 352.8 343 58.9
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 3.4e-95 352.4 280 69.3
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 4.4e-95 352.1 272 67.3
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 8.3e-94 347.8 254 74.0
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 1.1e-93 347.4 258 72.9
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 3.1e-93 345.9 252 73.4
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 1.6e-92 343.6 314 63.1
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 2.7e-92 342.8 252 75.0
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 3.5e-92 342.4 254 71.3
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 1.0e-91 340.9 320 59.7
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 1.7e-91 340.1 282 66.3
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 7.2e-90 334.7 340 57.4
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 3.6e-89 332.4 305 61.6
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 3.0e-88 329.3 263 68.8
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 4.0e-88 328.9 258 69.0
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 1.2e-87 327.4 206 79.6
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 3.4e-87 325.9 374 53.5
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.3e-83 313.9 282 62.1
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.3e-83 313.9 263 66.2
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 7.2e-82 308.1 251 68.5
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 9.5e-82 307.8 304 60.2
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.2e-81 307.4 206 77.7
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 1.2e-81 307.4 201 76.6
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 6.1e-81 305.1 246 70.7
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 8.0e-81 304.7 250 68.4
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 1.5e-79 300.4 211 73.9
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.4e-77 293.9 325 52.9
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 1.5e-74 283.9 295 54.2
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.5e-74 283.9 297 56.6
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.2e-73 280.8 184 78.3
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 1.4e-72 277.3 243 63.4
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 3.1e-72 276.2 259 62.5
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 8.3e-70 268.1 297 53.2
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.0e-67 261.2 232 63.4
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 4.3e-66 255.8 199 66.8
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 7.3e-66 255.0 227 60.8
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.3e-64 250.0 293 51.2
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 8.9e-64 248.1 344 46.8
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.0e-63 246.9 290 51.7
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 2.4e-61 240.0 165 74.5
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 2.7e-60 236.5 155 80.0
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 2.1e-57 226.9 208 60.6
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 1.6e-49 200.7 130 79.2
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 2.4e-48 196.8 163 65.0
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 7.6e-31 138.7 121 63.6
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 1.6e-28 131.0 303 32.3
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 5.6e-26 122.5 328 33.8
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 5.5e-21 105.9 72 77.8
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 9.6e-18 95.1 321 30.5
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 2.8e-17 93.6 78 67.9
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.1e-13 81.6 52 84.6
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 1.1e-13 81.6 83 56.6
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 1.8e-11 74.3 50 68.0
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 4.1e-08 63.2 178 34.8
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 5.3e-08 62.8 57 59.6
CDE04G0373 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 6.5e-06 55.8 45 71.1


User provided reference genes

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