Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 0.0e+00 1386.7 922 100.0
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 6.3e-312 1074.7 936 82.2
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 7.6e-308 1060.4 928 79.0
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 1.3e-304 1049.7 934 78.9
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.5e-303 1046.2 923 76.6
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 1.0e-299 1033.5 927 77.3
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 7.1e-298 1027.3 923 78.0
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.2e-297 1026.5 917 77.4
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 2.7e-297 1025.4 929 78.3
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 1.3e-294 1016.5 919 74.6
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 1.3e-294 1016.5 919 74.6
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 2.8e-294 1015.4 929 77.6
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 3.2e-290 1001.9 950 72.3
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 3.3e-279 965.3 927 76.6
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.4e-253 880.2 779 79.2
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 3.8e-251 872.1 756 83.2
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 7.2e-250 867.8 961 69.5
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 2.3e-203 713.4 965 60.8
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.9e-187 659.4 861 61.9
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 6.9e-168 595.5 566 78.3
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.7e-166 590.9 954 52.1
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 5.1e-163 579.3 959 52.6
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 2.3e-155 553.9 902 51.8
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 3.0e-155 553.5 889 53.5
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 1.1e-152 545.0 950 54.0
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 9.1e-152 542.0 959 53.5
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.5e-151 540.0 951 53.3
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.9e-150 537.0 965 53.5
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.2e-149 533.1 954 52.7
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 6.1e-148 529.3 966 55.6
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.0e-147 528.5 947 54.4
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 2.6e-146 523.9 850 44.6
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 1.7e-145 521.2 877 49.4
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.2e-143 515.0 901 55.0
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 3.5e-143 513.5 900 52.8
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.3e-142 511.5 984 51.6
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 3.8e-142 510.0 830 51.7
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 9.4e-141 505.4 901 50.6
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.6e-140 504.6 906 49.6
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 2.7e-140 503.8 973 52.6
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 4.0e-139 500.0 963 50.5
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 1.2e-138 498.4 896 51.9
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 2.6e-138 497.3 977 51.3
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 2.6e-138 497.3 956 50.5
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 3.7e-137 493.4 909 52.3
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 3.1e-136 490.3 925 50.6
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 3.5e-135 486.9 962 54.1
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 5.9e-135 486.1 780 56.8
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 2.3e-134 484.2 1014 47.8
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 8.6e-134 482.3 1029 49.7
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.1e-133 481.9 800 52.9
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 1.1e-133 481.9 784 56.4
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 2.5e-133 480.7 930 51.0
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 4.7e-132 476.5 772 54.9
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 8.0e-132 475.7 800 52.1
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.4e-131 474.9 904 48.2
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 2.0e-130 471.1 1052 48.6
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 2.6e-130 470.7 784 54.5
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 9.8e-130 468.8 783 56.4
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 2.9e-129 467.2 967 46.1
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.1e-128 465.3 941 50.3
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.8e-128 464.5 798 52.9
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 2.4e-128 464.2 773 55.2
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 5.4e-128 463.0 792 53.0
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 2.7e-127 460.7 779 55.3
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 2.7e-127 460.7 778 56.4
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.7e-126 458.0 936 49.9
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.9e-126 457.2 990 44.3
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 3.9e-126 456.8 1001 50.4
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 2.5e-125 454.1 781 54.3
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 4.3e-125 453.4 900 49.6
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 1.6e-124 451.4 904 49.1
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 2.1e-124 451.1 924 47.9
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 8.0e-124 449.1 798 50.9
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 8.0e-124 449.1 902 48.1
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 3.1e-123 447.2 838 48.7
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 8.9e-123 445.7 771 52.5
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 2.0e-122 444.5 990 41.7
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.6e-122 444.1 920 45.2
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 3.4e-122 443.7 924 49.9
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 9.8e-122 442.2 906 48.3
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 2.2e-121 441.0 784 55.2
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 2.2e-121 441.0 784 56.0
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.9e-121 439.9 1011 48.8
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 8.3e-121 439.1 802 53.7
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 7.8e-119 432.6 888 49.8
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 8.6e-118 429.1 905 48.5
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.2e-116 425.2 781 52.5
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.8e-116 424.1 826 46.6
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 3.6e-116 423.7 939 41.4
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 2.3e-115 421.0 789 52.6
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 4.0e-115 420.2 936 44.7
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 5.2e-115 419.9 921 46.4
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.0e-114 417.9 1035 44.2
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 9.8e-114 415.6 859 49.0
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 1.4e-112 411.8 930 44.9
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.9e-112 411.4 917 47.3
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 2.7e-111 407.5 797 44.2
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 3.5e-111 407.1 765 47.3
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.9e-109 401.4 923 47.7
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 1.1e-107 395.6 955 48.8
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.1e-107 395.6 764 50.4
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.4e-107 395.2 907 37.4
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.8e-107 394.8 936 49.1
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 7.6e-106 389.4 889 46.9
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 7.8e-103 379.4 731 43.9
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 5.1e-102 376.7 920 41.8
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 7.3e-101 372.9 805 51.4
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 6.2e-100 369.8 943 46.6
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 1.2e-98 365.5 944 40.7
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 2.0e-98 364.8 794 43.6
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 1.5e-93 348.6 868 48.7
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 3.3e-93 347.4 781 46.0
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 3.3e-85 320.9 793 48.3
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 6.0e-79 300.1 987 41.3
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 1.5e-77 295.4 840 44.8
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 2.8e-76 291.2 782 48.6
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 5.3e-75 287.0 902 41.8
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 7.9e-71 273.1 845 41.8
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.9e-69 268.5 815 34.4
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 5.0e-65 253.8 490 42.4
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 6.5e-65 253.4 281 51.6
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.8e-62 245.4 750 40.1
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 8.7e-62 243.0 330 50.3
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 4.5e-58 230.7 281 50.9
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 8.2e-52 209.9 261 50.2
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 3.4e-50 204.5 384 39.1
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.6e-47 194.5 819 36.0
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 7.9e-47 193.4 218 58.7
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-44 185.7 266 48.5
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 6.1e-39 167.2 391 38.4
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.8e-38 165.6 238 45.8
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 8.2e-36 156.8 394 37.1
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.1e-32 146.4 160 51.2
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 2.4e-27 128.6 131 55.7
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 6.5e-25 120.6 71 83.1
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 6.1e-23 114.0 77 76.6
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 2.4e-19 102.1 189 39.2
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 2.0e-18 99.0 92 46.7
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 2.6e-13 82.0 88 53.4
Sp6g02640 Schrenkiella parvula HOM05D004873 ORTHO05D006122 3.4e-13 81.6 124 46.0
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 1.3e-12 79.7 95 43.2
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 6.4e-12 77.4 131 38.2
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 3.2e-11 75.1 142 38.0
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 3.2e-11 75.1 101 39.6
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 7.0e-11 73.9 141 37.6
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 1.7e-09 69.3 187 32.1
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 6.8e-06 57.4 88 45.5


User provided reference genes

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