Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 0.0e+00 1155.2 647 100.0
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 6.3e-301 1036.9 648 89.5
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 5.2e-295 1017.3 647 87.8
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.6e-294 1015.0 648 88.6
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 6.3e-293 1010.4 651 88.5
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 6.3e-293 1010.4 651 88.5
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 1.1e-292 1009.6 654 86.7
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 1.4e-292 1009.2 648 87.8
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 1.1e-289 999.6 646 87.6
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.6e-280 969.1 652 84.5
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 5.2e-279 964.1 650 80.9
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 9.2e-276 953.4 648 83.6
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 5.8e-270 934.1 660 81.1
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 2.9e-269 931.8 651 80.3
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 1.0e-266 923.3 654 80.3
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 8.4e-261 903.7 651 78.6
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 5.3e-231 804.7 667 70.3
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 3.3e-217 758.8 664 67.8
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 3.4e-214 748.8 660 65.3
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 2.9e-213 745.7 662 65.1
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.1e-212 743.8 664 64.3
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.2e-212 741.9 670 65.8
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 9.4e-212 740.7 662 64.8
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 3.0e-210 735.7 661 63.1
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 2.6e-209 732.6 664 66.1
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.2e-208 729.6 658 63.8
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 3.7e-208 728.8 659 63.0
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 4.8e-208 728.4 663 63.3
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.4e-206 722.2 667 62.1
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 5.9e-206 721.5 664 62.2
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.7e-205 719.9 662 63.9
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 2.2e-205 719.5 668 62.7
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 2.5e-204 716.1 665 63.0
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.5e-204 716.1 660 62.7
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.5e-204 716.1 667 61.6
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.5e-204 716.1 660 62.9
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 7.2e-204 714.5 657 61.8
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.2e-203 713.8 667 61.9
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.6e-203 713.4 672 62.1
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-203 713.0 660 62.6
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 6.1e-203 711.4 665 62.4
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 1.8e-202 709.9 668 62.3
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 3.9e-202 708.8 667 61.2
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 8.8e-202 707.6 660 62.4
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.1e-201 707.2 659 62.2
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.5e-201 706.8 660 62.0
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.7e-200 703.4 659 61.0
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 4.8e-200 701.8 665 61.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.8e-199 699.9 666 61.9
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 1.2e-198 697.2 661 61.3
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-197 693.7 660 61.7
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 1.7e-197 693.3 660 61.1
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 9.4e-196 687.6 659 60.8
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.1e-195 686.4 662 60.6
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 4.7e-195 685.3 660 61.8
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 4.7e-195 685.3 662 60.6
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 6.1e-195 684.9 671 62.1
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 6.1e-195 684.9 671 62.1
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 6.7e-194 681.4 660 61.1
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 8.2e-192 674.5 636 61.9
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.1e-191 674.1 664 62.0
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 2.4e-191 672.9 653 59.1
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 2.5e-188 662.9 658 62.8
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 7.2e-188 661.4 674 59.1
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 2.2e-184 649.8 665 57.6
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 2.8e-184 649.4 670 58.7
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.8e-183 646.7 672 61.2
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.4e-183 646.4 656 57.8
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 7.0e-183 644.8 677 59.7
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 2.7e-182 642.9 660 58.8
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 5.9e-182 641.7 672 60.6
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 1.3e-181 640.6 653 59.6
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 2.9e-181 639.4 662 56.5
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 8.6e-181 637.9 658 57.9
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 1.5e-180 637.1 662 57.1
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.5e-180 636.3 670 59.4
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-179 634.0 662 56.2
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 2.1e-179 633.3 655 57.4
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.7e-179 632.1 652 58.3
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.1e-179 631.7 661 55.4
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 8.0e-179 631.3 653 59.3
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.8e-178 630.2 662 56.0
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.8e-178 630.2 655 56.3
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.3e-178 629.8 658 59.0
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 5.2e-178 628.6 655 60.0
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 6.8e-178 628.2 658 58.7
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 5.7e-177 625.2 659 59.5
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 3.7e-176 622.5 666 57.7
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 6.3e-176 621.7 661 58.4
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 3.1e-175 619.4 656 59.8
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 3.5e-174 615.9 657 56.8
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 5.0e-173 612.1 653 57.3
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.5e-172 610.5 663 57.5
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 2.5e-172 609.8 657 55.6
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 3.3e-172 609.4 657 55.4
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 4.3e-172 609.0 420 83.1
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 7.3e-172 608.2 661 54.8
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 1.2e-171 607.4 654 57.3
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.6e-171 607.1 651 60.8
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 3.6e-171 605.9 658 55.2
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.0e-170 604.4 662 55.6
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 5.2e-170 602.1 651 56.2
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 3.4e-169 599.4 663 53.8
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.3e-168 597.4 669 53.2
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.4e-167 594.0 665 57.1
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 1.9e-167 593.6 655 57.1
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.4e-167 593.2 546 62.3
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.4e-167 593.2 546 62.3
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 3.5e-166 589.3 653 56.4
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 4.6e-166 589.0 665 53.4
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 7.8e-166 588.2 665 53.4
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.0e-165 587.8 649 54.1
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.3e-165 586.6 614 57.3
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 4.3e-164 582.4 540 62.0
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 7.3e-164 581.6 665 55.0
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.1e-162 577.8 660 54.4
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.8e-162 577.0 662 52.6
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 8.9e-162 574.7 671 54.8
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.2e-161 574.3 656 54.4
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 1.5e-161 573.9 669 53.5
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 2.6e-161 573.2 659 54.9
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 9.8e-161 571.2 662 54.2
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 2.9e-160 569.7 656 53.4
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.9e-159 567.0 671 51.1
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 5.4e-159 565.5 675 55.4
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 9.2e-159 564.7 654 55.5
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.7e-158 563.1 650 51.5
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.5e-158 562.8 651 53.3
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 5.1e-157 558.9 661 52.2
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.8e-155 553.1 662 53.0
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 8.9e-154 548.1 554 57.8
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 3.7e-152 542.7 653 53.0
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.4e-151 540.8 678 50.0
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 9.2e-151 538.1 656 52.7
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 6.0e-150 535.4 674 49.1
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 8.6e-149 531.6 676 49.7
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.1e-148 531.2 649 51.5
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.4e-146 524.2 654 49.4
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.2e-145 521.2 658 50.6
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 3.4e-145 519.6 682 47.5
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 2.2e-144 516.9 655 48.2
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 2.1e-139 500.4 654 50.3
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 5.8e-137 492.3 657 48.4
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 4.9e-136 489.2 670 47.0
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.1e-135 488.0 534 54.7
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.9e-132 477.2 611 52.2
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 4.3e-132 476.1 662 48.9
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.3e-131 474.6 532 58.3
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 4.0e-130 469.5 660 48.5
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 6.4e-128 462.2 628 51.3
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 6.9e-122 442.2 622 47.9
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 5.1e-117 426.0 656 44.8
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 3.1e-114 416.8 401 61.3
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 4.6e-110 402.9 401 59.9
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 6.7e-109 399.1 403 59.3
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 6.3e-107 392.5 670 42.2
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 2.8e-83 313.9 660 38.6
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 3.7e-83 313.5 547 41.7
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 6.3e-83 312.8 311 59.5
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 2.9e-64 250.8 228 60.5
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 5.0e-64 250.0 433 39.7
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 7.0e-58 229.6 652 34.7
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 9.2e-58 229.2 629 33.5
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 3.4e-44 184.1 265 41.9
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.6e-36 157.9 224 55.8
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 5.4e-34 150.2 112 66.1
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 3.5e-25 120.9 135 50.4
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 6.6e-24 116.7 77 71.4
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.6e-23 113.6 106 52.8
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 2.9e-19 101.3 135 40.0
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 6.4e-19 100.1 79 59.5
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 2.7e-17 94.7 126 49.2
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.9e-15 88.6 58 67.2
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.8e-14 84.7 79 51.9
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.6e-14 84.3 78 59.0
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 2.2e-11 75.1 60 61.7
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 4.9e-11 73.9 485 22.9
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 4.9e-11 73.9 311 27.0
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 8.1e-06 56.6 76 56.6


User provided reference genes

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