Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.0e-143 513.5 266 100.0
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 2.6e-139 498.8 266 95.9
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 2.2e-138 495.7 266 95.9
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 2.2e-138 495.7 266 95.9
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 2.2e-138 495.7 266 95.9
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.8e-138 495.4 266 95.5
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.8e-138 495.4 266 95.5
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 8.2e-138 493.8 266 95.5
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 8.2e-138 493.8 264 95.8
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 2.4e-137 492.3 266 95.5
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 2.4e-137 492.3 266 95.1
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 2.4e-137 492.3 266 95.1
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.2e-136 490.0 266 94.7
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 3.4e-136 488.4 266 94.7
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.4e-134 483.0 266 93.6
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 4.2e-134 481.5 266 93.6
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 5.5e-134 481.1 266 93.6
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.4e-132 476.5 269 93.3
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 6.7e-132 474.2 262 93.5
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 3.7e-114 415.2 272 82.4
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.2e-107 393.7 272 79.8
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.6e-107 392.5 272 78.7
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 9.8e-107 390.6 280 76.1
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 9.8e-107 390.6 280 76.1
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.7e-106 389.8 280 76.1
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 1.8e-105 386.3 278 76.3
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.8e-105 386.3 271 77.9
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 5.4e-105 384.8 270 77.8
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 1.2e-104 383.6 277 75.5
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.7e-104 382.5 270 77.4
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 5.9e-104 381.3 272 75.7
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 5.9e-104 381.3 270 75.6
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.0e-103 380.6 275 76.4
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.0e-103 380.6 275 76.4
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 2.9e-103 379.0 265 77.0
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 2.9e-103 379.0 272 75.7
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 2.9e-103 379.0 274 75.2
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.8e-103 378.6 273 75.5
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 3.8e-103 378.6 270 76.7
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 6.6e-103 377.9 237 84.4
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 8.6e-103 377.5 280 74.3
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 8.6e-103 377.5 268 75.4
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 1.1e-102 377.1 273 77.3
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 1.1e-102 377.1 270 74.8
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 1.1e-102 377.1 273 75.8
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.5e-102 376.7 271 75.6
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.5e-102 376.7 271 75.6
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.9e-102 376.3 274 73.4
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.5e-102 375.9 270 76.3
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 2.5e-102 375.9 268 76.9
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 2.5e-102 375.9 271 75.6
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 7.3e-102 374.4 271 75.3
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 7.3e-102 374.4 278 74.1
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 9.5e-102 374.0 273 74.4
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 1.6e-101 373.2 267 75.3
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 1.6e-101 373.2 275 75.3
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.6e-101 373.2 277 74.4
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 1.6e-101 373.2 265 76.6
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 2.1e-101 372.9 275 73.5
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 2.1e-101 372.9 278 72.7
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 2.8e-101 372.5 280 72.9
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 3.6e-101 372.1 273 75.5
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 3.6e-101 372.1 278 75.2
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 4.7e-101 371.7 271 75.3
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 8.0e-101 370.9 270 75.6
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.0e-100 370.5 279 73.8
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 1.0e-100 370.5 278 74.8
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.4e-100 370.2 274 74.5
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.4e-100 370.2 266 74.4
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 1.4e-100 370.2 268 75.7
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 1.8e-100 369.8 273 73.3
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.8e-100 369.8 274 74.1
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.3e-100 369.4 271 74.9
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.0e-100 369.0 274 74.1
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 4.0e-100 368.6 272 75.0
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 5.2e-100 368.2 278 74.5
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 8.9e-100 367.5 274 73.0
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.2e-99 367.1 273 72.2
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.2e-99 367.1 276 72.1
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 1.5e-99 366.7 273 70.7
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.5e-99 366.7 276 73.6
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 2.6e-99 365.9 280 73.6
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 5.7e-99 364.8 274 73.4
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 1.3e-98 363.6 267 72.3
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 3.7e-98 362.1 224 84.4
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.7e-98 362.1 274 73.7
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 1.8e-97 359.8 273 73.3
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.8e-97 359.8 263 73.0
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 2.4e-97 359.4 271 71.2
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 3.2e-97 359.0 271 71.2
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 4.1e-97 358.6 273 71.1
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 5.4e-97 358.2 271 74.9
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 1.2e-96 357.1 270 73.7
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 3.5e-96 355.5 272 72.8
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 3.5e-96 355.5 218 84.9
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 5.9e-96 354.8 227 82.4
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 5.9e-96 354.8 274 71.5
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 5.9e-96 354.8 275 72.4
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 7.8e-96 354.4 198 89.9
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 7.8e-96 354.4 284 70.1
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.3e-95 353.6 272 70.2
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.3e-95 353.6 276 71.0
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.7e-95 353.2 282 71.6
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 3.0e-95 352.4 270 71.9
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 6.6e-95 351.3 272 72.8
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 8.6e-95 350.9 273 73.3
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.1e-94 350.5 270 73.3
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.5e-94 350.1 234 79.5
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 1.5e-94 350.1 273 72.5
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.5e-94 349.4 273 71.4
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 4.3e-94 348.6 277 70.4
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 5.6e-94 348.2 278 70.5
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 9.5e-94 347.4 274 71.2
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 3.6e-93 345.5 269 72.9
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 4.0e-92 342.0 272 71.0
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 1.2e-91 340.5 274 69.7
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 3.5e-88 328.9 192 84.9
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 3.1e-84 315.8 218 75.7
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 4.0e-84 315.5 228 74.1
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 4.0e-84 315.5 281 63.3
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.3e-82 310.5 196 79.1
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 8.1e-77 291.2 169 86.4
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 8.9e-76 287.7 245 68.2
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 2.4e-65 253.1 159 82.4
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 3.5e-64 249.2 134 93.3
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 1.8e-60 236.9 192 69.3
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 4.5e-59 232.3 161 70.2
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 7.6e-59 231.5 194 71.1
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 3.3e-54 216.1 198 64.1
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.4e-52 210.7 164 63.4
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 8.7e-47 191.4 273 49.5
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.9e-42 176.4 124 71.8
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.3e-39 167.5 96 84.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 3.0e-39 166.4 232 49.1
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.3e-37 161.0 146 66.4
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.8e-37 159.1 184 50.0
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.8e-37 159.1 184 50.0
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.7e-22 108.2 80 76.2
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 1.2e-19 101.3 109 58.7
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 7.7e-11 72.0 156 35.3
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 1.7e-10 70.9 175 30.3
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.6e-08 64.3 38 81.6
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 8.0e-08 62.0 38 81.6
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 6.7e-07 58.9 60 48.3


User provided reference genes

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